Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0356 ATGTACCAACATCACCAACAGCAAGGAAAGAACATCCACTCCTCTTCTTCCAGAATGCCAATCTCAGCTGAGAGGCACATGTTCCTTCAAACCGGAAATGGCTCTGGTGATTCTGGACTTGTCCTCTCTACTGATGCTAAGCCCAGATTGAAATGGACAGCAGATCTACATGCCAGGTTTATAGAAGCAGTCAATCAGCTAGGTGGAGCTGACAAGGCAACTCCTAAGACAGTAATGAAACTCATGGGAATTCCAGGGCTTACTTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTAAGCAAGAATCTGCATGGACAAACTAACAATGTGACACACAAAATCAGTGCAGCAACGGGAGAAAGACTTCCTGAAACAAGTGGAACTCATATGAATAATTTAAGCCTCGCGCCACAGGCTAACAAAGATCTACACATAGGCGAGGCCCTGCAGATGCAGATAGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGCTGTGCTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAACTTGGGTATGGTGGGACTTGAAGCAGCAAAAGTTCAACTCTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGTTTGAGTTCAGCCTTTTCAGAACTGAAGGAACTACAAGGATTCTGCCCACAACAAACACAAAACAACCAACCGACCGACTGCTCAATGGACAGCTGCCTCACATCCTGCGACGGTGGATCTCAAAAGGAACAAGAAATACAAAATCCATCAGGGATGGGCTTAAGATCCTTCAATGCGCATATGTTCATGGAAAGAAAGGAAGCCATGGAAGCACCTATCCTGAGGAACTCTGAACTCAAATGGTGTGATGAAGTGAAAAAGAAAGGCACCTTTCTGAGCAACCCTTTGGGCAAGAGTACGGAAAGACGAGGTTATGCTTCCGAAAGAAGTCCCGGCGACTTATCTATGAGCATCGGACTTGAACGAGAAACTGAGAATAATGGAAGCAGCATGTATCCTGAGAGATTAATGATGGGGAGAGAGGCAGATGGTGAATTCCTACACCGAAACACAGGTAATAAGCCAGAATCGATAAAACCACTGGAAGAAAAGGTTCCTCAGGAATATAGATTACCTTACTTTGCAGCGTCCAGATTGGACCTCAACACTCGTGAAGAAAACGATGCTGCGATGAGCGGCAAACAACTGGATTTGAACGGATTCAGCTGGAGTTGA 1227 0.4499 MYQHHQQQGKNIHSSSSRMPISAERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQTNNVTHKISAATGERLPETSGTHMNNLSLAPQANKDLHIGEALQMQIEVQRRLNEQLEAVLEKAQETLGRQNLGMVGLEAAKVQLSELVSKVSSQCLSSAFSELKELQGFCPQQTQNNQPTDCSMDSCLTSCDGGSQKEQEIQNPSGMGLRSFNAHMFMERKEAMEAPILRNSELKWCDEVKKKGTFLSNPLGKSTERRGYASERSPGDLSMSIGLERETENNGSSMYPERLMMGREADGEFLHRNTGNKPESIKPLEEKVPQEYRLPYFAASRLDLNTREENDAAMSGKQLDLNGFSWS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0356 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Lele29g0356 408 Coils Coil 155 175 - -
Lele29g0356 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 257 IPR044848 GO:0003700
Lele29g0356 408 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Lele29g0356 408 Pfam MYB-CC type transfactor, LHEQLE motif 146 166 IPR025756 -
Lele29g0356 408 MobiDBLite consensus disorder prediction 296 322 - -
Lele29g0356 408 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Lele29g0356 408 FunFam Myb family transcription factor 46 104 - -
Lele29g0356 408 Gene3D - 46 104 - -
Lele29g0356 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0356 Lele-ChrLele29 2208464 2211133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0356 79 408 G2-like Transcription Factor Family AT3G04030 46.705 1.62e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele29g0356 Myb_DNA-binding 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1062 09 19835665 19838550 Lele29g0356 29 2208464 2211133 CCT
Lele29g0356 29 2208464 2211133 Lele31g1183 31 18276334 18278975 hybridization
Lele29g0356 29 2208464 2211133 Lele32g0346 32 2170759 2173060 hybridization