LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g0353	ATGGCGAGTCACAGAATAGGACAGACTGGTTTGTCTGAGTCATCACCTTCAGGTCATCACTATGGAGTACTTCACGGAATTAATAATACTCCTGCAGCAGCATCCACCTTAATCAATCAAGGCTCTGCTTTTGATTTTGGAGAGCTGGAAGAAGCAATTGTTCTGCAAGGAGTAGAGATTAGAAATGATGAAGGCAGAGCACCTTTATTCACAGCCAGGCCTGCAGCTACTACTCTGGAAATGTTCCCATCTTGGCCAATCAGATTTCAGCAAACTCATAGAGTAGTAGGAGGATCAAAGTCAGGAGGAGAAAGCACGGATTCAGGATCAGGTGTTAATACCATATCAAGCAAAAGTGAGCTTCAGTTTGATTTTGAGCCAGAATCTCCCATTAATAATAAGAACGCGTCTTCTTCTTCAGAGCTTCATCATCATCATCGTCAGAAACTTCAGCAACAGGAGATGGCGAGTGATGCTTCAAGAACAGGCCCATCACAGTCACAGAATCAATCACCTGCAAAATCGTCTCAGGAAAAGAGGAAGGGAGCTGGTTCTTCATCGGAGAAACCAATTGATGCAAAGACACTGAGACGTCTAGCTCAAAACAGAGAAGCTGCTCGGAAGAGCCGTTTGAGGAAAAAGGCTTACGTGCAGCAGCTAGAGACCAGTAGGATAAAGCTTACCCAGCTTGAACAAGACCTTCAAAGAGCCCGATCTCAGGGACTGTTCTTAGGCTGTGCTGGTGCCGGTGGCAACATAAGCTCTGGATCTGCAATATTTGACATGGAATATGCAAGATGGTTAGAGGAAGACCACCGGCACATGACGGAGTTGCGAGCGGCGCTTCAGGCGGCGTTATCGGACAGCGAGTTAAGAATAATGGTGGACGGATATCTGTTGCATTACGATGAGATCTTCAGGCTGAAAGGAGTCGCTGCAAAATCAGACGTGTTTCATCTTATTACGGGCATGTGGACTTCTCCTGCTGAACGCTGCTTCCTTTGGATGGGTGGTTTCAGACCCTCTGAACTCATCACGATGTTGATACAGCAGTTAGAGCCGTTGGCTGAGCAGCAGATTATGGGAATGTATGGCCTCAGACATTCATCACAGCAAGCAGAAGAGGCTCTCTCTCAAGGCCATGAGCAACTCCAGCAGTCCCTCGTCGACACCATCGCCGGCGGCACCGTCGGCGACGGCGTGCAACAAATGGTCATCGCCATGAGCAAGCTCTCCAATCTTGAAGGATTCGTCCGCCAGGCGGATAACATGAGGCAACAGACACTGCAACAGTTATGTAGATTGCTGACAATTCGCCAAGCAGCGAGATGCTTCCTTGTAATGGGAGAGTATTATGGTCGCCTTCGTGCTCTTAGTTCTCTCTGGGCTTCAAGACCTCGAGAGACGATGATGAACGACGATAACTCATGTCAAACGACGACGACGGAATTGCAAATGGTGCATCCGAATCATTTTGGCGGATTCTGA	1488	0.4798	MASHRIGQTGLSESSPSGHHYGVLHGINNTPAAASTLINQGSAFDFGELEEAIVLQGVEIRNDEGRAPLFTARPAATTLEMFPSWPIRFQQTHRVVGGSKSGGESTDSGSGVNTISSKSELQFDFEPESPINNKNASSSSELHHHHRQKLQQQEMASDASRTGPSQSQNQSPAKSSQEKRKGAGSSSEKPIDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQDLQRARSQGLFLGCAGAGGNISSGSAIFDMEYARWLEEDHRHMTELRAALQAALSDSELRIMVDGYLLHYDEIFRLKGVAAKSDVFHLITGMWTSPAERCFLWMGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGHEQLQQSLVDTIAGGTVGDGVQQMVIAMSKLSNLEGFVRQADNMRQQTLQQLCRLLTIRQAARCFLVMGEYYGRLRALSSLWASRPRETMMNDDNSCQTTTTELQMVHPNHFGGF	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g0353	495	Pfam	bZIP transcription factor	193	235	IPR004827	GO:0003700\|GO:0006355
	Lele29g0353	495	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	197	212	IPR004827	GO:0003700\|GO:0006355
	Lele29g0353	495	FunFam	BZIP family transcription factor	193	242	-	-
	Lele29g0353	495	MobiDBLite	consensus disorder prediction	95	138	-	-
	Lele29g0353	495	MobiDBLite	consensus disorder prediction	95	197	-	-
	Lele29g0353	495	MobiDBLite	consensus disorder prediction	153	180	-	-
	Lele29g0353	495	SUPERFAMILY	Leucine zipper domain	194	237	IPR046347	GO:0003700\|GO:0006355
	Lele29g0353	495	Coils	Coil	213	240	-	-
	Lele29g0353	495	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	192	236	IPR004827	GO:0003700\|GO:0006355
	Lele29g0353	495	ProSiteProfiles	DOG1 domain profile.	257	465	IPR025422	GO:0006351\|GO:0043565
	Lele29g0353	495	CDD	bZIP_HBP1b-like	194	245	-	-
	Lele29g0353	495	Gene3D	-	193	242	-	-
	Lele29g0353	495	MobiDBLite	consensus disorder prediction	181	197	-	-
	Lele29g0353	495	SMART	brlzneu	190	266	IPR004827	GO:0003700\|GO:0006355
	Lele29g0353	495	Pfam	Seed dormancy control	274	349	IPR025422	GO:0006351\|GO:0043565
	Lele29g0353	495	PANTHER	TRANSCRIPTION FACTOR TGA9	136	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g0353	Lele-ChrLele29	2180761	2186817	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g0353	144	495	bZIP Transcription Factor Family	AT1G08320	68.258	6.77e-178	501

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele29g0353		DOG1	1.1e-30	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele29g0353	29	2180761	2186817	Lele11g1059	11	17872254	17875950	CCT
	Lele29g0353	29	2180761	2186817	Lele12g0257	12	2238186	2238908	CCT
	Lele29g0353	29	2180761	2186817	Lele31g1186	31	18299795	18305858	hybridization
	Lele29g0353	29	2180761	2186817	Lele32g0342	32	2141507	2152390	hybridization