Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0351 ATGAGTCTGAGAGATCAGTACTACAATGTACAAGATAAGAATAATCCTTACTTTCAATATGCTTCTCCAACTTTCATAGAATGGCTCAAGCCATCGTCATCATCTTCTTCTTCTTCTGATGAGATTTGTTATCAAAACGAGGTCGTTCGGGAGACTATACAGTTTCTGCCTCCATCGAGAGACTTGGAAGTGGAAAAGGAGGCCGTGTTCGGATCAGTGAAAGAAGAGAAGGTATTGTTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATTACAAAGAAGACTGTGATCATGGTGGGGCTGATATGAAGAAGAAGGTTACTGATCATGTTAAAGAAGAAGACGAAGAAGAAGAAGACATGACGATGAGGACGACGATGAAGAGAAGCTTCCATGGATTTAACCAAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAATATGCAGATGCATATGTGGGGTCATGGGTCTGAATTTAGGAAAGGACCAGATTCACTTAGAGGAACACAACCAGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGGTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCACTGAAGGACTTCAGAACCCTGCAGACCCATTACAAGAGAAAGCATGGCTCAAAACCCTTCATGTGTAGAAAATGTGTCAAGACTTTCGCTGTCAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGGAAGCTTTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCTTTCGGAAAGGGACACAAACCCCATCCTTCTCTTGAAGGTTTTGAGAAGGACTCCGAAGAAGATGAAGCTACTATTACTACTCACACATGA 954 0.435 MSLRDQYYNVQDKNNPYFQYASPTFIEWLKPSSSSSSSSDEICYQNEVVRETIQFLPPSRDLEVEKEAVFGSVKEEKVLLEQVGVALHIGLPTNYKEDCDHGGADMKKKVTDHVKEEDEEEEDMTMRTTMKRSFHGFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCVKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEATITTHT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0351 317 FunFam Zinc finger protein WIP2 211 293 - -
Lele29g0351 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Lele29g0351 317 PANTHER ZINC FINGER PROTEIN WIP2 30 310 IPR043584 GO:0003700|GO:0010468
Lele29g0351 317 SUPERFAMILY beta-beta-alpha zinc fingers 228 262 IPR036236 -
Lele29g0351 317 Gene3D Classic Zinc Finger 157 180 - -
Lele29g0351 317 MobiDBLite consensus disorder prediction 287 317 - -
Lele29g0351 317 Gene3D Classic Zinc Finger 201 289 - -
Lele29g0351 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 295 IPR013087 -
Lele29g0351 317 SUPERFAMILY beta-beta-alpha zinc fingers 149 181 IPR036236 -
Lele29g0351 317 SMART c2h2final6 205 237 IPR013087 -
Lele29g0351 317 SMART c2h2final6 242 262 IPR013087 -
Lele29g0351 317 SMART c2h2final6 158 180 IPR013087 -
Lele29g0351 317 MobiDBLite consensus disorder prediction 291 317 - -
Lele29g0351 317 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0351 Lele-ChrLele29 2151639 2154472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0351 18 307 C2H2 Transcription Factor Family AT1G08290 57.313 2.45e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0351 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1070 11 17950104 17954235 Lele29g0351 29 2151639 2154472 CCT
Lele12g0245 12 2163328 2167282 Lele29g0351 29 2151639 2154472 CCT
Lele09g1068 09 19889449 19895931 Lele29g0351 29 2151639 2154472 CCT
Lele29g0351 29 2151639 2154472 Lele31g1189 31 18331239 18334125 hybridization
Lele29g0351 29 2151639 2154472 Lele32g0336 32 2100170 2102960 hybridization