Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0324 ATGCTTTGTGGAGAGTGGAGTGGAGAATCATGGTTGAAGGAATGGAGTGGGGATGAAGTTAATGGATTAGGTTCTGTGTTTGAATGTGTCAAGGCTGGGACACCTGTTGAAGTAGACCCAGACGAGTTTGGTAAATGCATACACCTGTCTCAGGCTGCTATTGGTGAGGCAAAGAATAAATCAAGTGAACCTGCGATCCTTTATCTGAAGTTTGGTGACCAGAAGCTTGTTTTGGGAACCCTTTCCCAGGAGAAATTCCCTCAACTATGTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTGTGGTTACAAAGCGGAATTACCAGGATATCCTTTGCAGCTATTGATTGCTGGTAGCACGGAGATGGATGAGGACTTGACTGACAGTGAGGATGATGAGGATATCCCAGTGATGGTCAAAGATCATGCAAAACCCGATATAAAGCCTGAAGTAGCAAAGGCTGCTGCTTCTAAAAGTATTGATGTCAAGCCTGCTGATTCTAAAAAGCAAGTCAAGGTTGTGGATCCAAAGAAAGATGAAGATGATTCAGATGACGAAGAGGATGATGAATCAGATGATGACGATGACAGTTCTGATGAGGATATGTTGGGCGGTGATGTTGATGGTAGTGATGAGAGCGAGAGTGATGAAGATGATGATGAAACCCCTCCTAAAAAGGTTGATCAGGCTAAGAAGAGGCCTAACGAATCTGCACTGAAAACTCCTGTTCCTGCCAAGAAAGCAAAATCTGCTACCCCTCAAAAGACTGATGGTAAGAAAGGCGGTCATGTTGCAACTCCTCATCCCCTAAAGAAGGATGGAAAAACTCCTAAAAGCGAAACTCCGAAATCCGGGGGACAGTTTACCTGCAAATCTTGTAGCAAGACTTTTAACTCAGAAGGCGGTCTGCAACAACATTCAAAGGCTAAGCATGGGGTGAACATTGGCATTGGTACGTATGAGGTGTCTAAACTTGTTTGA 1017 0.4336 MLCGEWSGESWLKEWSGDEVNGLGSVFECVKAGTPVEVDPDEFGKCIHLSQAAIGEAKNKSSEPAILYLKFGDQKLVLGTLSQEKFPQLCFDLVLEKKFELSHNWKNGSVYFCGYKAELPGYPLQLLIAGSTEMDEDLTDSEDDEDIPVMVKDHAKPDIKPEVAKAAASKSIDVKPADSKKQVKVVDPKKDEDDSDDEEDDESDDDDDSSDEDMLGGDVDGSDESESDEDDDETPPKKVDQAKKRPNESALKTPVPAKKAKSATPQKTDGKKGGHVATPHPLKKDGKTPKSETPKSGGQFTCKSCSKTFNSEGGLQQHSKAKHGVNIGIGTYEVSKLV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0324 338 MobiDBLite consensus disorder prediction 174 191 - -
Lele29g0324 338 MobiDBLite consensus disorder prediction 292 317 - -
Lele29g0324 338 Gene3D Classic Zinc Finger 298 324 - -
Lele29g0324 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 323 IPR013087 -
Lele29g0324 338 SUPERFAMILY beta-beta-alpha zinc fingers 290 322 IPR036236 -
Lele29g0324 338 MobiDBLite consensus disorder prediction 152 338 - -
Lele29g0324 338 Gene3D Nucleoplasmin core domain 28 119 - -
Lele29g0324 338 MobiDBLite consensus disorder prediction 192 231 - -
Lele29g0324 338 FunFam Histone deacetylase HDT1 25 121 - -
Lele29g0324 338 ProSitePatterns Zinc finger C2H2 type domain signature. 302 323 IPR013087 -
Lele29g0324 338 MobiDBLite consensus disorder prediction 264 291 - -
Lele29g0324 338 Pfam Nucleoplasmin-like domain 30 115 IPR041232 -
Lele29g0324 338 MobiDBLite consensus disorder prediction 232 247 - -
Lele29g0324 338 SMART c2h2final6 300 323 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0324 Lele-ChrLele29 1966577 1969466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0324 30 116 C2H2 Transcription Factor Family AT5G03740 55.172 2.53e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0324 NPL 1.2e-07 CL0055