Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0318 ATGAGGAATAATAAGGTTGCAGGCGAACAATTATCTACTGTTCGATCCATCGTTGGCGCCGAATATACTGACATGGATATCATAAGAGCACTGCACTTGGCCAACAATGACGTCACCGCCGCCATTAACATTATTTTTGATACACCCAAGTTCATATTGAAAGAGAGGTTAAGTGTGGGCACTCAGAGGAATTCACAAGTTTCGCATCGAAGTTCAAGCTCTGATGCTGGAACTGGAGGTGGATGTGTCATGGCGAAGTCCAAGCCAACTGGTGCAGAGGTCAACAGTCGCTCTCTGGGGTCGGAAGCAAATGTTGCCGCCTTGGTTTCCAACTCAGGTGATTTTACCGCCCAGGATGTGGGAGGGCATTCATGTTCAGCTGATAGTGATTGGTGGTTCGTGGGTTGCGGGGAAATGGCTGGGCTTTCGACCAGTAAAGGGAGGAGTATGAATCCTGGCGATCAAGTATTGTTCAAATTTCCGCTGAAGACAGGGCCAACTACGCCGTCCCCAGGTAAGGGTTTTGGACGGGGACGGCAAGCAGCAGCAACTTGTTCGGAGATAGTGCGATTCTATACCAAAGAAACGGGAGAGATTGGTAGAATACCGAATGAATGGGCTAGGTGTCTCTTGCCCCTTGTACGGGATAAGAAAGTTAGGATTGACGGGCATTGTAAACATGCTCCTAATAATTTGAGCATTATGGACACCATTATTTTGTCAATCAGAGTATTCATCAATAGTTCAATGTTTCGTAAACATCATCAGGCTTCTCTTAAGGACGCCACAAATTCCACTGACGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCTTGAGCCCTTTCAAAAAGGCAGAGTTCACTCCTGGTGACTTGTACTCAAAGAAGCGCCCTTTCAATGAAAAGGAGAACTCTTCTCTTCAGGCAACATTACTGCCCATCAAATCCAAGCATCCTTCTGGAAATGATAATGAGGTAGACAATGAGGATTCAATATCTGAAACCGATCTTGACAAGATTGTTGGCGTTGGAGCTTGCTCAGAGCTAGAGGAAATGGATCCCCCTGGTAGTCTTCAGTGTGAATTGCGGCCCTATCAAAAGCAAGCTCTTCATTGGATGATCCAGCTGGAGAGGGGACGGCCCATAGATGAGGCAGCAACAACCCTTCATCCTTGTTGGGAAGCATATCACCTGGCAGACGAGAGGGTGCTGGTTATTTATTTGAATGTTTTTTCTGGTGAAGCTACAATAGAATTTCCAAGCACACTTCAGATGGCTAGAGGAGGAATTTTGGCAGATACTATGGGGCTTGGAAAGACCATTATGACCATAGCCCTCCTCCTTGCCGATTCAGGCACTGTTGGTTCATCATCAAGTAGTCAACCCATGGATCAGCCCTTATCTGAAAGTGGTGAAGTTAATGACACGGTGAGGAACTCTTCAAATGTACCTAAGAAGGCAAACAAGTTTTCTGGTTTTGATAAACTGAGGAAGCAGAGGAATACTCTAACAAATGGTGGCTGTCTGATAATATGTCCTATGACACTTCTAGGACAGTGGAAGGCAGAGATTGAAACTCATGTGCAGCCTGGATCTTTGTCTTTATATGTTCATTATGGACAGAGTCGACCAAAAGATTCAAGAACTCTGGCTCAGAGTGATGTTGTAATAACTACATATGGAATTGTAGCCTCTGAGTTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTTTTCTCAATTCGATGGTTTAGGGTGGTTCTAGACGAGGCACATACTATAAAATCTTCCAAAAGCCAAATATCTATGGCTGCTTCAGCTTTAGTTGCTGACAGGCGTTGGTGTCTTACTGGCACTCCTATACAGAACAACCTTGAGGATATTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTTGAGGAGGGTGATGAGAGAGGGCTGAAGTTGGTTCAATCCATCTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGTGTGGATCGAGATGGCAAGCCTATTATTGTTCTTCCTCCAGCTGAACTGCAGATAATTTACTGTGAACTCACTGAAGCTGAAAAGGACTTTTATGAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCCATATTGGAGCTGCTGTTACGTCTTCGGCAATGCTGTGACCATCCATTTCTTGTAATGAGCCGAGGCGATACTCAAGAATATTCCGATCTAAACAAACTAGCTAAACGTTTCCTCAAAGGAAGCCATAATGCTTCAGAAGAGGAAGCAAAAGACGCACCTTCACGGGCTTATATCCAAGAAGTTGTGGAAGAACTACGTAAGGGGGAACAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTATTGACCCCTTGTGCTCACTGCTTATGCCGGGAATGCCTCTTGGCTAGTTGGAGGAATTCTAATTCTGGCTTATGTCCTGTTTGTAGGAAAACAATAAGCAGGCAGGACCTTTTAACTGCCCCGAGGGAAAGTCGGTTTCAGATTGATATTGAGAAAAACTGGGTGGAGTCATGCAAGATAACTGCCCTTTTGCATGAACTTGAAAATCTTCGCTCATCAAGCTCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAATAACATTCCATTTGTACGTCTTGATGGGACTTTGAATCAGCAGCAGCGTGAAAAAGTACTTAGACAATTCTCAGAAGACAGCAATATCCTGGTGTTGTTGATGTCCCTCAAAGCTGGTGGAGTGGGTATAAATCTAACCGCAGCCTCAAATGCTTTTGTCATGGATCCATGGTGGAATCCAGCTGTGGAGGAGCAAGCTGTTATGCGAATCCATCGCATTGGACAAACGAAGAATGTGGCCATTAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAAGCAGTGCAAGCAAGGAAACAGCGAATGATTTCCGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGAATTGAGGAGTTGAAGATGCTTTTTACTTAG 3150 0.4451 MRNNKVAGEQLSTVRSIVGAEYTDMDIIRALHLANNDVTAAINIIFDTPKFILKERLSVGTQRNSQVSHRSSSSDAGTGGGCVMAKSKPTGAEVNSRSLGSEANVAALVSNSGDFTAQDVGGHSCSADSDWWFVGCGEMAGLSTSKGRSMNPGDQVLFKFPLKTGPTTPSPGKGFGRGRQAAATCSEIVRFYTKETGEIGRIPNEWARCLLPLVRDKKVRIDGHCKHAPNNLSIMDTIILSIRVFINSSMFRKHHQASLKDATNSTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNEKENSSLQATLLPIKSKHPSGNDNEVDNEDSISETDLDKIVGVGACSELEEMDPPGSLQCELRPYQKQALHWMIQLERGRPIDEAATTLHPCWEAYHLADERVLVIYLNVFSGEATIEFPSTLQMARGGILADTMGLGKTIMTIALLLADSGTVGSSSSSQPMDQPLSESGEVNDTVRNSSNVPKKANKFSGFDKLRKQRNTLTNGGCLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDSRTLAQSDVVITTYGIVASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAASALVADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSVDRDGKPIIVLPPAELQIIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKGSHNASEEEAKDAPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHCLCRECLLASWRNSNSGLCPVCRKTISRQDLLTAPRESRFQIDIEKNWVESCKITALLHELENLRSSSSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLNQQQREKVLRQFSEDSNILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0318 1049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 884 1049 IPR001650 -
Lele29g0318 1049 FunFam DNA repair protein RAD5B 421 681 - -
Lele29g0318 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 680 IPR027417 -
Lele29g0318 1049 MobiDBLite consensus disorder prediction 62 97 - -
Lele29g0318 1049 Pfam SNF2-related domain 369 758 IPR000330 GO:0005524|GO:0140658
Lele29g0318 1049 Gene3D - 424 693 IPR038718 -
Lele29g0318 1049 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 124 1049 - -
Lele29g0318 1049 ProSitePatterns Zinc finger RING-type signature. 829 838 IPR017907 -
Lele29g0318 1049 Pfam Zinc finger, C3HC4 type (RING finger) 811 859 - -
Lele29g0318 1049 SMART ultradead3 362 661 IPR014001 -
Lele29g0318 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 864 IPR013083 -
Lele29g0318 1049 SUPERFAMILY RING/U-box 801 860 - -
Lele29g0318 1049 CDD RING-HC 814 853 - -
Lele29g0318 1049 MobiDBLite consensus disorder prediction 459 490 - -
Lele29g0318 1049 SMART helicmild6 913 996 IPR001650 -
Lele29g0318 1049 SMART ring_2 814 853 IPR001841 -
Lele29g0318 1049 ProSiteProfiles Zinc finger RING-type profile. 814 854 IPR001841 -
Lele29g0318 1049 CDD DEXDc_SHPRH-like 366 680 - -
Lele29g0318 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 642 IPR014001 -
Lele29g0318 1049 MobiDBLite consensus disorder prediction 314 334 - -
Lele29g0318 1049 CDD UBA_Cbl_like 11 49 - -
Lele29g0318 1049 CDD SF2_C_SNF 880 1007 - -
Lele29g0318 1049 Gene3D - 696 1049 IPR027417 -
Lele29g0318 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 1038 IPR027417 -
Lele29g0318 1049 Pfam Helicase conserved C-terminal domain 884 996 IPR001650 -
Lele29g0318 1049 SMART HIRAN_2 134 246 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele29g0318 1049 Pfam HIRAN domain 135 242 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele29g0318 1049 MobiDBLite consensus disorder prediction 62 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0318 Lele-ChrLele29 1925221 1934158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0318 5 1049 RAD5 or RAD16-like Gene Family AT5G22750 70.219 0.0 1504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele29g0318 SNF2_N 5.9e-89 CL0023