Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0317 ATGGAGGCCCCTGTCATCAGATCGAGGGGTCGGCCGAGGAAACGTAGGAGAAAAGAGGATGAAAATGGGACGGATGATGGGAGATCCGTTCCCGATTTAAAAAGGCAAGCTGTTGGGACAAGAAGACCGATATCACTGGTTGGGCGATATATACTTAAAGAGTTTAAGGGTAATGGGGTATTTCTGGGGAAAGTTGGGTATTACGAGTGTGGTTTATATAGAGTCAATTACGAGGACGGTGATTATGAGGATTTAGATAGCAGCGAGATCCGTGGAATGCTTCTCAACGATTGTGATCTTGATGATGAGTTGACTAGAAGGAGGAATGAATTAGATCAACTGGTGTTGAAGTATAATGCCAAGAGAACAGATGGCACCGAGAATAGTTCTGCTAAATTAACCAAAGATGTCCTCGGGCTTGAGGCCCCTGCTTCAAGTGAATTGCCTGGTGGGTTATTGATTGAACAAGACGGGGTAGATGCCGAGGAGGATGCTCATTCATCAAGTGACGAAAGGGATTCCGTGTCTGATGCAGAGATACCTTCTCTTCCTCCTCCACTGCAGTTGCCACCGTCTTCAGGGACTATTGGGGTGCCAGAGCCATATGTCTCTCATCTTTTTGCAGTCTATGGATTTTTACGGTCATTCAGCATTCGCCTGTTTTTAAGTCCTTTTTCTTTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTTCAAATACTTTGTTTGATTCCATTCATGTTTCCCTGATGCGTGCATTGAGGCGTCACCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAACGATTGGGGCTTGCTGGATGCTTTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCGATTTATGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGATGTTTTGGAGTCTGAGGAAATGAAAGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGAGTATGAGGCTCAAGATATCCTTCCAGAAGGAAATTGGCCTAGATTCCATCCAACAAATGCTAAAAATGCTTGCAAGGATAAAGAAGCTACAAAGCTTGTTCTAGAATCTAATGCTGTGAAGCCACCAGGTAGTTCTGTTATAGATTTCAGAGACACTAGAAGGACTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCCGTCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATATCACTCTAGGTGTATCGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGAATGGGTTAAGTATTGCACGGGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATATGTACGGACAACTCTTCATGGGTACTTGTGACCACTTACTGGTACTCACCGTGAACAGTGAACTTTGTCTCAGATATTACAACCAGAAGGACATTTCAAAAGTTCTCCAATTGCTTTATGCTTCAGTAGACCATGGGCCCCTATATTATGGAATTTGTATGGCTGCGTTACAGTATTGGAATATTCCAGAAAGTATCCTGCCTGTATCTGTTAGAACTGGAACATATCTTAACAATTCAAGTACAGAGGAAGATGCAAAGTTCTCTAGTTTATCAACCACTCCTTCGGGTGAAAAAGAGCATACAGCTGTTAGTTTAGTGAAGACAGAATACCCTGTAACCGGTGGTATTGTTATTCAGGGTAATTACATAGCTCCATCTGACTCATTGGTTACCACTACTAGAGAGGCCTGTACTTTTGAAAGCAGCAATGACAATAGAACTAGAGAGTGCTTTACCATGAATACTATATTTCCTAAGGAGACTAGAATGGAGTCTGTCATCTCTGGTGGTCATCAACACAGTCTCTTTGATATGATCAACAGTCATGGGCGTGCAAATGATAAGCAGTTACCTTTTGCTCCATCCTTGCAACTTAAAGAAGGCAACCAAGCTAGCTCTGGAAAGTTTGAACATAATCCAACTAAGGATCTTGTATGCATGGGTTTTTCTTTTAAGCCTCAGTCGTACATTAATCACTATACGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAGTTGGCTATTCTTTCTTCCGAGGATTCTAGGTCAGAGGGTCATGTTTCAGATAATTTTAGGAAATTTACAGCTGAAAGCGCTTCTTTGCAAGCAAAAGCATTCTCAATGACTGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCAGCCTCAAGCAAGAGGGGTTGCATGCTAAATCATGCTGCCCTGAGTGCCACCAAAAGTGGCATCAAAGTTTTAAGCGGTCTTTCCACTGTAAGGAGTGGAGAGGGAATTCTTCCAAGCATTGCTACATATATCTTGTATTTGGAGGAAAGTTTACATGGTTTAATAGTTGGGCCTTTTCTAAATGCAAATTACAGAAAACAATGGCGTAAACGAGTGGAGCAGGCTAAATCATTTAAAGCTCTAAAGCCTCCTTTGCTTGAACTTGAGGAAAACATTCGCATAATATCTTTTACCGGTGAGTGGATTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTTTTATTCAAGGTGCTACAAGTTCTGTTGGAACAATACAGACACGTGCACCAAATGGAAGGCGCTACAAGAAACAATCAGCTATTGATGAAGTTACAGCTGATGTTTCTCATGAAAACAACTTTGACTGGTGGAATGGTGGTAAATCTATGAAAATATTATTTCTAAAAGCGGTTTTGCCAAAATCCGTGGTCAGAAAAGCAGCCCGCCAAGGTGGGCGGAAGAAAATTTCTGGTATTTCCTATGCTGATGGCTGCGAAATACCTAAAAGAAGCAGACAGATAGTTTGGAGAGCTGCGGTACAAATGAGTAGGAATGCATCACAGCTTGCAGTTCAGGTCAGATACCTTGACTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAGGGTCAAGAGACTGAATCTTCTGCATTCAGAAATGCTAATATCTGTGATAAGAAAGAAGTGGGGGGGAAACTTTTGTATGGAGTTGTTTTTAGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTAGAGCAAGGTCAAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGTGTTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTATAGAAAAAATGGCATCTCATCAAGAGAGCTTGAAGTTGGAATCTCAGCTGCAAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAACTGGGATGTATTTTCATGTGCTGTATGTCAGATGGATGTTTTAGCTGGGAATGCTCTCAAGTGTAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTTCAACCTTCTCTACAAACAAGGAGGTTGAGTTCTTGACCACATGCAAGCGCTGTTATGCTAAATTACTTGCTCAAAAAAGGACCAGTGACGAATCTCCAACTAGTCCCTTAGTCTTGCAAGGGCAAGAACATAGCTCTGTCACTGTTTTGAAGGGATCAAGACCTAAATGTTATGATCAAGCCTTGAAATTTGCCAGTATCAAGAATACTCGTCCTGACATGAAACAAGGCACTCCTGATTCCACTCTGGCAACGAAAAGCCGTCCTAGGAATTGTTCTTGGGGTATTATATGGAATAAGAAGAGCGGTGATGATACAGGCATTGATTTTAGGCTTAAAAACATACTTCTAAAGGGAGGTTCAAGTGCATGTCAATTACAACCTGTCTGTCACTTGTGCCGTAAGCCATATCAGTCTGATCTGATGTATGTTTGCTGTGACACATGCAAAAATTGGTATCATGCTGATGCTCTTGAGCTAGAAGAGTCAAAAATTTTTGAAGTGTCAGGCTTCAAATGCTGCAAGTGTCGCAGGATCAAATCTCCACACTGTCCTTACTCTGATAAAAAGCCCAAGATGCAGGAGGGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAGTTCTAGCACAGACAATTTTGGAGTTATTTTCGAACCAAAAGAGTGTGAGCCTGCTACCCCTAACTTTCCTATAGGAGATGATGGATTGAGACAAAATGACCCTCTGCTGTATTCTCTTTCAAGTGCCGAGCTGATAACAGACCCTAATGCAGAAGTGGATGTTAAGAGGAATGCTGTCTCTTGTCCAGGGCTACGGAAACTACCAGTGAGAAGACATGTTAAGCATGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGTTGAAATTTTAACACAAAATGGAACAGGTAGTCTGTCAGCTGCAGGGAAGGCATCATCTCCTGTGGAATATGACCCTGCTGTTTGCCTAGATAATAATCTGCTGAATGGCTGTGGAAGTGAAAATTTTGAATTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCCAGATGATAATCAGTTTGAGGAAGCTGATGGATCTGCAGACTTGTCTGGATACTTGGAAAATGTTTCCTCCACGAATATGGATGGCATTCCTGACGAATCTGGAGTTCTTAGTTTAGTTGATAAACCAGAACCTGCAGCTTGTTTACCAGGCAGCTGTTATCATTGTTGCCAATGCTTGCAGATGGAACCAGCTCCTGATCTCTCTTGTGAGATTTGTGGGCGTTGGGTTCACAGCGAATGTTCACCCTGGCTTGAATCACCTTCTAGGTTAGGAATCTCAAGCTGGAGGTGTGGTAGTTGTCGGGAATGGCAATAA 4992 0.4195 MEAPVIRSRGRPRKRRRKEDENGTDDGRSVPDLKRQAVGTRRPISLVGRYILKEFKGNGVFLGKVGYYECGLYRVNYEDGDYEDLDSSEIRGMLLNDCDLDDELTRRRNELDQLVLKYNAKRTDGTENSSAKLTKDVLGLEAPASSELPGGLLIEQDGVDAEEDAHSSSDERDSVSDAEIPSLPPPLQLPPSSGTIGVPEPYVSHLFAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDSIHVSLMRALRRHLETLSSEGSEHASKCLRCNDWGLLDALTWPVFVIQYLAIYGYTKGPEWKGFYDEIFNGEYYLLPVSRKLTILQILCDDVLESEEMKAEMGIREELEVGMEYEAQDILPEGNWPRFHPTNAKNACKDKEATKLVLESNAVKPPGSSVIDFRDTRRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGLSIARGTSLRGAELFGMDMYGQLFMGTCDHLLVLTVNSELCLRYYNQKDISKVLQLLYASVDHGPLYYGICMAALQYWNIPESILPVSVRTGTYLNNSSTEEDAKFSSLSTTPSGEKEHTAVSLVKTEYPVTGGIVIQGNYIAPSDSLVTTTREACTFESSNDNRTRECFTMNTIFPKETRMESVISGGHQHSLFDMINSHGRANDKQLPFAPSLQLKEGNQASSGKFEHNPTKDLVCMGFSFKPQSYINHYTHGDFAASAAAKLAILSSEDSRSEGHVSDNFRKFTAESASLQAKAFSMTVSRFFWPSSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSGIKVLSGLSTVRSGEGILPSIATYILYLEESLHGLIVGPFLNANYRKQWRKRVEQAKSFKALKPPLLELEENIRIISFTGEWIKLMDDWLVESSFIQGATSSVGTIQTRAPNGRRYKKQSAIDEVTADVSHENNFDWWNGGKSMKILFLKAVLPKSVVRKAARQGGRKKISGISYADGCEIPKRSRQIVWRAAVQMSRNASQLAVQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVGGKLLYGVVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYLVKEYEEGIEKMASHQESLKLESQLQRRRLKAACKDIFFYLTCKRDNWDVFSCAVCQMDVLAGNALKCNACQGYCHEGCSISSTFSTNKEVEFLTTCKRCYAKLLAQKRTSDESPTSPLVLQGQEHSSVTVLKGSRPKCYDQALKFASIKNTRPDMKQGTPDSTLATKSRPRNCSWGIIWNKKSGDDTGIDFRLKNILLKGGSSACQLQPVCHLCRKPYQSDLMYVCCDTCKNWYHADALELEESKIFEVSGFKCCKCRRIKSPHCPYSDKKPKMQEGTKKHRRPSKKDSSSTDNFGVIFEPKECEPATPNFPIGDDGLRQNDPLLYSLSSAELITDPNAEVDVKRNAVSCPGLRKLPVRRHVKHEGDGDESFGTKLSQVEILTQNGTGSLSAAGKASSPVEYDPAVCLDNNLLNGCGSENFEFMDFEPHTYFSVTELLQPDDNQFEEADGSADLSGYLENVSSTNMDGIPDESGVLSLVDKPEPAACLPGSCYHCCQCLQMEPAPDLSCEICGRWVHSECSPWLESPSRLGISSWRCGSCREWQ 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0317 1663 MobiDBLite consensus disorder prediction 160 193 - -
Lele29g0317 1663 Pfam DDT domain 203 257 IPR018501 -
Lele29g0317 1663 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 353 IPR028942 -
Lele29g0317 1663 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Lele29g0317 1663 SMART PHD_3 1170 1219 IPR001965 -
Lele29g0317 1663 SMART PHD_3 1329 1377 IPR001965 -
Lele29g0317 1663 SMART PHD_3 1610 1660 IPR001965 -
Lele29g0317 1663 SMART PHD_3 423 466 IPR001965 -
Lele29g0317 1663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1318 1394 IPR013083 -
Lele29g0317 1663 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Lele29g0317 1663 MobiDBLite consensus disorder prediction 1 32 - -
Lele29g0317 1663 SMART testlast3 200 260 IPR018501 -
Lele29g0317 1663 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Lele29g0317 1663 SUPERFAMILY FYVE/PHD zinc finger 395 467 IPR011011 -
Lele29g0317 1663 CDD PHD_SF 1329 1376 - -
Lele29g0317 1663 MobiDBLite consensus disorder prediction 160 177 - -
Lele29g0317 1663 Pfam PHD-finger 424 466 IPR019787 -
Lele29g0317 1663 PANTHER PHD FINGER FAMILY PROTEIN 42 1418 - -
Lele29g0317 1663 SUPERFAMILY FYVE/PHD zinc finger 1322 1383 IPR011011 -
Lele29g0317 1663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 482 IPR013083 -
Lele29g0317 1663 MobiDBLite consensus disorder prediction 15 32 - -
Lele29g0317 1663 MobiDBLite consensus disorder prediction 1387 1413 - -
Lele29g0317 1663 MobiDBLite consensus disorder prediction 1387 1408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0317 Lele-ChrLele29 1914181 1920900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0317 290 630 EF-hand Containing Proteins AT5G22760 41.226 5.73e-70 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele29g0317 DDT 2.6e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0317 29 1914181 1920900 Lele31g1227 31 18596803 18603485 hybridization
Lele29g0317 29 1914181 1920900 Lele32g0304 32 1892451 1900004 hybridization