Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0314 ATGGCGGAGGATCGGAACGGCGATAGCAATGAGGCAAGTGATTATAGTTCGGAGGACGAAGGGACGGAGGACTACAGACGAGGAGGTTATCACGCCGTTCAAATTGGCGACACTTTCAAAAATGGGTGCTATGTGGTCCAAAGCAAACTCGGCTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGATACCCAGAAATCGCGTTATGTAGCCCTAAAAATTCAAAAGAGTGCCCAGCACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAGATTGCTGAAGGGGATCTGGATGACAAGAAATGTGTCGTCAAGCTTTTGGATCACTTTAAGCATTCAGGACCTAATGGCCAGCATGTGTGTATGGTTTTTGAATTCTTGGGTGACAATCTTCTGACCGTTATAAAGTATAGTGATTACCGAGGGATTCCTATCTCGATGGTTAAAGAAATTTGCTTCCATATTCTGGTGGGATTGGATTACTTGCATCGTGAGCTATCTATAATACACACAGATTTAAAACCAGAGAATGTCTTGCTTTGGTCAATGATAGATCCATCCAAAGATCCTAGGAAATCAGGTGCTCCACTTATCCTTCCAAACACCAGGGATAAGACCATTTCAAAAAATGGGGCCACAAAAGACAGTACTAGTTCTAAAGGGGATCTGACCAGGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGTTGTGTTGAGGAGAGTCCCAAGGATGGTGAGGAGGATTCTAAACCACCTGAAGTAAAAGATTGTGGTTGTGGTGATGATGTAAAACAGACTGTGGAATCTGTTGAAGATAAACCTAGTAGTCTTGTAACCAAAGATGAATCAATGGAAGTTGTTGAAACCAAGGACATCCCAAATGGTAGTCATGGTCAACTGAGAGTTAGTCGTTCCATGAAAAAGAAGTTGCTTGATGCTGTTGATCTTAAATGCAAGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACGAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTCGGATGCAAATATTCAACTGCAGCTGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTTGCGCAGGTGAGGTTCTTTTTGATCCCCGCAGTGGTGACAACTATTCAAGGGATGAGGATCATTTGGCATTGATGATGGAGCTTCTTGGAACGATGCCTCGCAAGATTGCTCTTGGCGGTCGTTATTCTCGAGAGTTCTTTAATAGATATGGTGATTTAAAGCACATCCGCCGGTTACGTTTCTGGCCTCTTAATAAGGTGCTGACGGAGAAGTATGATTTTAGCGAGCCAGATGCGAATGACATGGCTGACTTCCTTGTTCCCTTACTCGATTTTGCCCCTGAAAAGAGGCCAACAGCTGCCCAGTGCCTTAATCATCCTTGGATCTCCGCAGGTCCTCGGACTCTTGAACCCTCCGTGACTACTGTCCAATCCGAGGCCACAGACAAGGTAATGTCTGAAAAGATGAATGAGAAGGCTGAGTTGGAGGCAGTTGAAGTTGGTATGCGGAATATAACCATTGATGGATCTCCAAAGGCACTCAAAGATTCACAGGCTACATAG 1635 0.4379 MAEDRNGDSNEASDYSSEDEGTEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTVIKYSDYRGIPISMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLWSMIDPSKDPRKSGAPLILPNTRDKTISKNGATKDSTSSKGDLTRNQKKKLRKKAKKAAQSCVEESPKDGEEDSKPPEVKDCGCGDDVKQTVESVEDKPSSLVTKDESMEVVETKDIPNGSHGQLRVSRSMKKKLLDAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGCKYSTAADLWSFACICFELCAGEVLFDPRSGDNYSRDEDHLALMMELLGTMPRKIALGGRYSREFFNRYGDLKHIRRLRFWPLNKVLTEKYDFSEPDANDMADFLVPLLDFAPEKRPTAAQCLNHPWISAGPRTLEPSVTTVQSEATDKVMSEKMNEKAELEAVEVGMRNITIDGSPKALKDSQAT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0314 544 Gene3D Transferase(Phosphotransferase) domain 1 98 185 - -
Lele29g0314 544 FunFam Serine/threonine-protein kinase SRPK-like protein 316 486 - -
Lele29g0314 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lele29g0314 544 Gene3D Transferase(Phosphotransferase) domain 1 303 486 - -
Lele29g0314 544 MobiDBLite consensus disorder prediction 206 223 - -
Lele29g0314 544 SUPERFAMILY Protein kinase-like (PK-like) 39 497 IPR011009 -
Lele29g0314 544 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
Lele29g0314 544 MobiDBLite consensus disorder prediction 1 26 - -
Lele29g0314 544 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0314 544 Pfam Protein kinase domain 322 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0314 544 MobiDBLite consensus disorder prediction 240 269 - -
Lele29g0314 544 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lele29g0314 544 SMART serkin_6 44 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0314 544 MobiDBLite consensus disorder prediction 194 269 - -
Lele29g0314 544 CDD STKc_SRPK 33 486 - -
Lele29g0314 544 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 505 - -
Lele29g0314 544 FunFam CMGC/SRPK protein kinase 30 129 - -
Lele29g0314 544 ProSiteProfiles Protein kinase domain profile. 44 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0314 Lele-ChrLele29 1897110 1900429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0314 1 536 EF-hand Containing Proteins AT5G22840 66.790 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele29g0314 Pkinase 8.7e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1108 11 18353208 18365751 Lele29g0314 29 1897110 1900429 CCT
Lele12g0212 12 1747038 1759260 Lele29g0314 29 1897110 1900429 CCT
Lele09g1108 09 20258469 20260839 Lele29g0314 29 1897110 1900429 CCT
Lele10g1076 10 22116462 22121405 Lele29g0314 29 1897110 1900429 CCT
Lele29g0314 29 1897110 1900429 Lele09g1104 09 20210327 20212735 CCT
Lele29g0314 29 1897110 1900429 Lele10g1071 10 22048581 22050999 CCT
Lele29g0314 29 1897110 1900429 Lele11g1104 11 18312679 18314768 CCT
Lele29g0314 29 1897110 1900429 Lele12g0215 12 1795490 1798238 CCT
Lele29g0314 29 1897110 1900429 Lele31g1232 31 18625617 18628947 hybridization
Lele29g0314 29 1897110 1900429 Lele32g0299 32 1867474 1870803 hybridization