Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0307 ATGGCGAACGGTAAGGATTCCGACGAGTTCCGGGTGTTATCGAGGGTCCGTGCGGGGCTGAAGAGAGAGTTTGCATTCGCCATGAAGGCTCAATCCGAGATCTGTGGATCCCTTGGACGGACCCGTGCCAGCAAAAACAAGAATGGGGTTCAAGATAGTCCCGGCAACAAGAGGTCCAAGAAATCTGGTTCGTCTAGGGTTAAGAGAGATGAGCAGAATAGTGCGAAGCCGGTGGCCGATGTTGTTATCGAATCCATTGTTTTGGAAGAGGTCAAGGGGAAGGAGATAAAGGCGGTAGAAGATATGGAGGATTTTATGAGCGAGGAGGAGGCAAAAAGCGATGTGGTGGATCTATCGTGTGACGACGAACCCAAGAACCTAGTGAGTGAGACGATGGGCAAGAGGGAACCCATGGATGAGGCTTCAGTGCCCGTTTGTGATGAGGAGCACAAGGGCGAGGGTGTAGAAACTGTAAGCGACGATGAGCGGAAAAGTATTCCAATGTCAGAATCGCATAAGGAAGCAACAATTGATGATATAGTGCAACCCACTTGCCAACCCGAGTCCAAGGAACGTCAAACAAACGAAGATGAGTTACATAAGTCTTTAACTGAGAACTTGAGTGGGGGAGAGACATGTTCTCCAGAGGAAAAGGGTTTTATTCTGACTCCCCCTGTTTCGCTTAAGGATGACAATAAGGTGAAGGCAATGATAGGGGGGCCACCGAGGCGATTTACGCGGTCATCTCTGATACCACAGCAAGATTATTTGAAGCTCTCAAATGATGGAAAAGAAGCTTGTGATAGAGCCATTGAATTCAGTGATGTTAAGAGGGAAAGTGAGGATGCTTCATTGATCACTAAGCCAACTCAAACAAAAATGTCGAAGAATAGTGCCTCGAAAAAGTTCCCAACTAAGCTAAAGGACCTTCTAGCCACGGGGATTCTTGAAGGACTATCTGTTAAATATGTTCGGGGAGTGAAGGCTCGAAGGCCTGGAGAATCGGGGCTCCGAGGAGAGATTAGGCGCTCAGGGATTTTGTGCTATTGCGAAGCTTGTAACGGGGTCGAGGTTGTATCACCCACCGTGTTTGAGCTGCATGCTAGTAGTGCAAACAAACGGCCCCCAGAGTATATATACCTTGAGAATGGGAATACACTCCGTGATGTCATGAATACATGTTCTAGTGTTGCAATGGATGCTTTGGAGGAAGCAGTACAGAAAATCCTCGGGAACTTCACCTTTAAGAAATCTGCAATCTGTTTGAATTGCAGAGTGGCCATATCTCAAGCTGGCAAGGGATGGTCAAGACTACTCTGCGATACTTGCGTGGTCTTAAAAGAGTCTCAACCTAGCCCTATTCAAATAGCTGAGGCTAGCAATTCCTGTTCTTCACCTGCAGTTACTCTCAGGTCTCCAGAATCAGTTGTTGTTCCATCAACATTAACCAGTGGGATGAAGCACACAGCTTCTGGTGGCAAGAGTCAAGGAAGAATAACTAAAAAGGATCTGCGGTTGCATAAATTGGTTTTTGAGGAAGATGTGTTGCCAGATGGAACTGAAGTTGCCTACTATGTTCGCGGACAGAAACTTTTGGTGGGTTACAAAAAAGGGTTTGGAATTGTTTGTAGCTGCTGTGACTCTGAGGTAAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGGCATCACGACGCAAGCCTTATCTGCACATATACACATCCAATGGTGTCTCTCTCCACGAATTGTCCATTTCTCTATCAAAAGGTCGGAGGTTTTCTACCTATGAAAACGATGATCTCTGCAGCATCTGCTCAGATGGAGGGAGTCTTTTGTGTTGTGATGGGTGCCCAAGGGCTTTTCACATAGACTGTGTTCCTCTGCCGACCATTCCAACTGGCACTTGGTATTGTAAATATTGCCAGAACCTGTTCCAGAAAGACAAATATGTGGAGCATAACAGGAATGCATTGGCAGCAGGAAGGATTGCAGGGGTGGATCCTTTAGAACAGATAAACCAACGATGCATTCGTATTGTCAAAACTGTAGAGGTTGACCATGGTGGATGTGCATTATGCAGAAGCCAAGATTTCAGCAAAAGCTTTGGTCCTCGAACAGTAATTATTTGTGATCAGTGTGAAAGGGAATATCACGTAGGCTGTTTGAAGGAGCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCATTGATTGCAGTCGGATTCATTCTGCTCTGCTTAGTTTGGTCACCTGTGGGGCGGAGAACCTCCCTGATTCTCTATTAAGTATGATACAAAAGAAGCATGAAGAGAAGGGTGTGGAAAATGTGGCTGATCTAGATATAAAATGGAGAATCTTAAATTGGAAACTTGCTGCTTCTGATGAAACTAGGCAGCTGCTTTCAAAGGCTGTTGCAATCTTCCATGAGCGGTTTGATCCAATAGTTGATTCAACTTCAGGCCGTGATTTCATTCCTACAATGCTTTACGGAAGGAACATCAGGGGTCAAGATTTTGGTGGGATGTATTGTGCAGTGCTAACAGTGAATGAAGTGGTCGTTTCTGCGGGCATATTTCGTATATTTGGCGCAGAGGTGGCTGAGCTTCCCTTAGTGGCAACAATTGCCGATTGCCAAGGACAGGGTTACTTCCAGTCCTTGTTTTGTTGCATAGAAAGGCTGCTTGGATCTTTAAATGTGAAACAGTTCGTGCTACCGGCTGCTGAAGAGGCGGAATCAATATGGACGAGAAAATTTGGTTTTACCAAGTTAGAACAAGATGAGGTAAACAATTATAGGAGATATTATCATATGATGATATTTCAAGGGACCTCAGTGCTGAGGAAGTCGGTTCCTGCACCACCCGAATTGTGCGTCAGTGCGGTGTAA 2901 0.4567 MANGKDSDEFRVLSRVRAGLKREFAFAMKAQSEICGSLGRTRASKNKNGVQDSPGNKRSKKSGSSRVKRDEQNSAKPVADVVIESIVLEEVKGKEIKAVEDMEDFMSEEEAKSDVVDLSCDDEPKNLVSETMGKREPMDEASVPVCDEEHKGEGVETVSDDERKSIPMSESHKEATIDDIVQPTCQPESKERQTNEDELHKSLTENLSGGETCSPEEKGFILTPPVSLKDDNKVKAMIGGPPRRFTRSSLIPQQDYLKLSNDGKEACDRAIEFSDVKRESEDASLITKPTQTKMSKNSASKKFPTKLKDLLATGILEGLSVKYVRGVKARRPGESGLRGEIRRSGILCYCEACNGVEVVSPTVFELHASSANKRPPEYIYLENGNTLRDVMNTCSSVAMDALEEAVQKILGNFTFKKSAICLNCRVAISQAGKGWSRLLCDTCVVLKESQPSPIQIAEASNSCSSPAVTLRSPESVVVPSTLTSGMKHTASGGKSQGRITKKDLRLHKLVFEEDVLPDGTEVAYYVRGQKLLVGYKKGFGIVCSCCDSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKGRRFSTYENDDLCSICSDGGSLLCCDGCPRAFHIDCVPLPTIPTGTWYCKYCQNLFQKDKYVEHNRNALAAGRIAGVDPLEQINQRCIRIVKTVEVDHGGCALCRSQDFSKSFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCIDCSRIHSALLSLVTCGAENLPDSLLSMIQKKHEEKGVENVADLDIKWRILNWKLAASDETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNEVVVSAGIFRIFGAEVAELPLVATIADCQGQGYFQSLFCCIERLLGSLNVKQFVLPAAEEAESIWTRKFGFTKLEQDEVNNYRRYYHMMIFQGTSVLRKSVPAPPELCVSAV 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0307 966 MobiDBLite consensus disorder prediction 109 177 - -
Lele29g0307 966 Pfam PHD-finger 601 642 IPR019787 -
Lele29g0307 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 666 IPR013083 -
Lele29g0307 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 746 IPR013083 -
Lele29g0307 966 FunFam PHD finger family protein 785 954 - -
Lele29g0307 966 MobiDBLite consensus disorder prediction 37 60 - -
Lele29g0307 966 CDD PHD1_AIRE 600 640 - -
Lele29g0307 966 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 844 944 IPR016181 -
Lele29g0307 966 Pfam Tify domain binding domain 534 582 IPR032308 -
Lele29g0307 966 Pfam Tify domain binding domain 339 394 IPR032308 -
Lele29g0307 966 SUPERFAMILY FYVE/PHD zinc finger 680 745 IPR011011 -
Lele29g0307 966 ProSiteProfiles Zinc finger PHD-type profile. 598 643 IPR019787 -
Lele29g0307 966 SMART PHD_3 600 641 IPR001965 -
Lele29g0307 966 SMART PHD_3 688 744 IPR001965 -
Lele29g0307 966 MobiDBLite consensus disorder prediction 37 79 - -
Lele29g0307 966 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 587 664 - -
Lele29g0307 966 ProSitePatterns Zinc finger PHD-type signature. 601 640 IPR019786 -
Lele29g0307 966 MobiDBLite consensus disorder prediction 206 225 - -
Lele29g0307 966 Gene3D - 785 953 - -
Lele29g0307 966 PANTHER AUTOIMMUNE REGULATOR 119 954 - -
Lele29g0307 966 SUPERFAMILY FYVE/PHD zinc finger 589 643 IPR011011 -
Lele29g0307 966 MobiDBLite consensus disorder prediction 108 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0307 Lele-ChrLele29 1817917 1823180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0307 304 955 PHD Transcription Factor Family AT2G36720 46.871 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele29g0307 TDBD 1.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1118 11 18448483 18459413 Lele29g0307 29 1817917 1823180 CCT
Lele12g0203 12 1613262 1616271 Lele29g0307 29 1817917 1823180 CCT
Lele09g1120 09 20352725 20355782 Lele29g0307 29 1817917 1823180 CCT
Lele10g1089 10 22301028 22304054 Lele29g0307 29 1817917 1823180 CCT
Lele29g0307 29 1817917 1823180 Lele31g1242 31 18704363 18709593 hybridization
Lele29g0307 29 1817917 1823180 Lele32g0286 32 1783007 1788353 hybridization