Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0305 ATGGACATGGAAGCAGCAGACCAGCTTGTGGGGTCATCCACCGCCTCTGTTAACGTCGCCAAAGGGAAACGCACCAAACGCCATAGGCCTTTCTCCGCCACACTCACTCACTCCACCTCATCCTCTGCTTCTGCCGATGATTACGCCTCCTTTACTTCCTCCGCCTCCACCACTTTTGACGGTGCCGACGATGAAGAAGAAGACATGGCTAATTGCTTGATTCTCCTGGCTCAGAGCGGTGATGCTCCTCATAAGAGGCCCCCCACCACCAAGAATATCAGTGGCTTCTATGTTTACGAGTGCAAAACTTGTAACAAATCCTTCCCTTCCTTTCAAGCCTTGGGCGGACACAGAGCGAGCCACAAGAAGCCTAAGGTTGAGCCCCCACAACCACTCACTGCCTCCACCACCTCTGCCGCACAAGTTGCGAGTTTTGAGTTTGAAGAAGCAGGGGAAGATCTGTTCAAGAGCACCTCTCAGATTTCCCTTCAATTAGCGAGCAACAAAGCTTTCCCTAGCAACAAGGCAAAAATTCACGAGTGTTCCATCTGTGGGTCGGAGTTCACGTCCGGGCAAGCATTGGGCGGCCACATGAGGAGGCACAGAGCATCCGCCAACACCGCCCCCGTGGGAGTGAAGCCGAGGAATGTTCTCGAATTGGATCTTAATTTGCCGGCGCCGGAGGACGATCTCCGGGACTCCAAGTTTCAGTTCACAGCCGGGGCGAAATCTCTGGTGCTGTCTGCTCCGGCTCTGGTGGACTGCCATTATTGA 774 0.5401 MDMEAADQLVGSSTASVNVAKGKRTKRHRPFSATLTHSTSSSASADDYASFTSSASTTFDGADDEEEDMANCLILLAQSGDAPHKRPPTTKNISGFYVYECKTCNKSFPSFQALGGHRASHKKPKVEPPQPLTASTTSAAQVASFEFEEAGEDLFKSTSQISLQLASNKAFPSNKAKIHECSICGSEFTSGQALGGHMRRHRASANTAPVGVKPRNVLELDLNLPAPEDDLRDSKFQFTAGAKSLVLSAPALVDCHY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0305 257 MobiDBLite consensus disorder prediction 32 47 - -
Lele29g0305 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Lele29g0305 257 SMART c2h2final6 179 201 IPR013087 -
Lele29g0305 257 SMART c2h2final6 99 121 IPR013087 -
Lele29g0305 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Lele29g0305 257 Pfam C2H2-type zinc finger 179 203 - -
Lele29g0305 257 Pfam C2H2-type zinc finger 98 124 - -
Lele29g0305 257 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele29g0305 257 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Lele29g0305 257 PANTHER ZINC FINGER PROTEIN ZAT5 52 238 - -
Lele29g0305 257 MobiDBLite consensus disorder prediction 1 47 - -
Lele29g0305 257 Gene3D Classic Zinc Finger 96 201 - -
Lele29g0305 257 SUPERFAMILY beta-beta-alpha zinc fingers 98 201 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0305 Lele-ChrLele29 1810672 1811445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0305 19 257 C2H2 Transcription Factor Family AT2G28200 44.828 3.85e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0305 zf-C2H2_6 1.6e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1125 09 20400650 20408186 Lele29g0305 29 1810672 1811445 CCT
Lele10g1094 10 22351578 22355246 Lele29g0305 29 1810672 1811445 CCT
Lele29g0305 29 1810672 1811445 Lele31g1244 31 18716667 18717440 hybridization