Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0304 ATGGCCACAACGTGGAATGTTAATGAGCAGGATACGATGGTCAAGATGAATGAGTTTGGGGTGCACGACTTCATGGACGACCCAAGCTTCGATCAGTTCATGAATTTGATTCGAGGTGAGAGCCAAGGCCCACTTTCCTCCACCTTCGATCCATTTCTCTGCTATAACACTTGCTTGGCTGTTCATGATCTAATCCCACCTTCTCCACTCAGCTCTTTCTCCTGTTTTGATGGAGACGTTCAGGCCAAGGCAGAAAGATCCGTAGATCATCGGGAAGACGATGATGATGGGGACGATTCTGCAAGGGGTGTTAATAATTCAAAACAGAGGCCGAAAGGTGATAGGTCCGTCATTTTGATCTCTGAGAGGAAGAGGAGAGAACGAATGAAGCAAGCCTTGTACGCATTGCGTTCTTTGGTTCACAGCATAACTAAGATGGATAAGGCAAGCATTCTGGGAGATGCGGCAACGTATGTGCAGGAGCTGCAAGCACGAGCCAAGAAGCTGAAGGCTGAGGTTGAAGATCTTGAAGTATCCTACATGTTAGCCTCATCACAAGACTACAATCAAGGATCAGCATCTCCCAGAAGATCATGCAGGGCTCTCGAGTCTGTGTCAGGGTACAGTGTGGCCAGTTCACACCTGGCCACGCTTTGTCACTCATTTCAACTTAGGTTGACATTGAAAGTAAGCAAGCTCTGTCCTACTCCTACGATATACAAAAGAAATGCCTTAACTGCCATGCCATTCAAGAGAAAAGGATCTGAGCTTAAATCTGAATCATGA 786 0.4656 MATTWNVNEQDTMVKMNEFGVHDFMDDPSFDQFMNLIRGESQGPLSSTFDPFLCYNTCLAVHDLIPPSPLSSFSCFDGDVQAKAERSVDHREDDDDGDDSARGVNNSKQRPKGDRSVILISERKRRERMKQALYALRSLVHSITKMDKASILGDAATYVQELQARAKKLKAEVEDLEVSYMLASSQDYNQGSASPRRSCRALESVSGYSVASSHLATLCHSFQLRLTLKVSKLCPTPTIYKRNALTAMPFKRKGSELKSES 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0304 261 Coils Coil 152 186 - -
Lele29g0304 261 SMART finulus 119 168 IPR011598 GO:0046983
Lele29g0304 261 MobiDBLite consensus disorder prediction 85 117 - -
Lele29g0304 261 Pfam Helix-loop-helix DNA-binding domain 121 163 IPR011598 GO:0046983
Lele29g0304 261 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 21 193 - -
Lele29g0304 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 184 IPR036638 GO:0046983
Lele29g0304 261 Gene3D - 105 178 IPR036638 GO:0046983
Lele29g0304 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0304 Lele-ChrLele29 1802711 1803820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0304 11 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 45.588 4.97e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele29g0304 HLH 2.8e-08 No_clan