Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0303 ATGATCCATATAGAAGCCTACCCTGCGTTAGTTAGTATTGGGGTATTTTCTCAATTGAGTTGGTATAACTTTATTGCATCGTATAAACAAGGCCGCATACCAAAAGGACCTAATGGGCCTGCTGGAGCATTGGGTGGCCCAATGGTCCAATCTAAGAGAAACAGCTGCAAGCACTACAGAAGGGGCTGCAAGATAAGAGCACCCTGTTGCAATGAGATTTTTGACTGTCGCCATTGCCATAATGAAGCTAAAAACTCCGAAGACATCAATTCCGTCGATCGTCACGATGCACCCCGCCACGACATTATAAATGTCATCTGTTCCTCATGTGAAACAGAACAAGATGTTCAACAGTATTGCATCAACTGTGGAATCTGCATGGGGAAGTACTTTTGTGCTACATGCAAATTCTTTGACGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAGATGTGGTTGTTGCTACTCCAATGTGATGAAAGAAGGACACCGATGTGTCGAACGAGCGATGCATCACAATTGCCCTGTTTGTATTGAGTATCTATTTGATACCTTGAGAGACATCACGGTCTTGCCTTGCGGCCATACTATACATTTGGAGTGCCTTAGAGAGATGGAGAAACATTGCAGGTATTCGTGCCCTGTTTGTTCGAAATCCATCTGTGACATGTCAAATCTGTGGAAGAAGATTGACCAAGTGATCGCTTCGGCACCAATGCCTGAATCTTACAAAGAAAAGATGGTGTGGATACTGTGCAATGATTGTGGAGTGAACTCTCAAGTGCAGTTCCATGTTGTAGCCCTCAAGTGTCAGAGTTGCAACTCATACAACACAAGACAGATACAGGGAAGCCCTACCGCTGCATGCACTTCTTCGGTGGCTGAGAAGCACCAATGCCCATTGCCCAGAGCGGGGTTTGAAAATGATCCAACGCTTTCTGACATCTTGGAACCTTGTGAAAGGTTACTACAAAGTGAGCGATCACTTAAACCTGCTCAAGAAATTTTACAGGAAATGGACCACCAGGACCACACCGGCCTTACCACCTTCCTTCGCAGCGAGCTGCTTGAAGCTGTGTCGCAAGATGGTTTAGACTGA 1152 0.4523 MIHIEAYPALVSIGVFSQLSWYNFIASYKQGRIPKGPNGPAGALGGPMVQSKRNSCKHYRRGCKIRAPCCNEIFDCRHCHNEAKNSEDINSVDRHDAPRHDIINVICSSCETEQDVQQYCINCGICMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECLREMEKHCRYSCPVCSKSICDMSNLWKKIDQVIASAPMPESYKEKMVWILCNDCGVNSQVQFHVVALKCQSCNSYNTRQIQGSPTAACTSSVAEKHQCPLPRAGFENDPTLSDILEPCERLLQSERSLKPAQEILQEMDHQDHTGLTTFLRSELLEAVSQDGLD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0303 383 Pfam Ring finger domain 191 234 IPR001841 -
Lele29g0303 383 SUPERFAMILY RING/U-box 191 240 - -
Lele29g0303 383 Gene3D - 265 305 - -
Lele29g0303 383 ProSiteProfiles Zinc finger RING-type profile. 192 235 IPR001841 -
Lele29g0303 383 Pfam CHY zinc finger 56 137 IPR008913 GO:0008270
Lele29g0303 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 264 IPR013083 -
Lele29g0303 383 SUPERFAMILY CHY zinc finger-like 51 126 IPR037274 GO:0008270
Lele29g0303 383 ProSiteProfiles Zinc finger CHY-type profile. 49 125 IPR008913 GO:0008270
Lele29g0303 383 SMART ring_2 192 234 IPR001841 -
Lele29g0303 383 FunFam RING finger and CHY zinc finger domain-containing protein 1 263 306 - -
Lele29g0303 383 SUPERFAMILY Zinc hairpin stack 128 185 IPR037275 -
Lele29g0303 383 Pfam Zinc-ribbon 239 297 IPR039512 -
Lele29g0303 383 ProSiteProfiles Zinc finger CTCHY-type profile. 127 191 IPR017921 -
Lele29g0303 383 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 51 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0303 Lele-ChrLele29 1796860 1802230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0303 56 301 C2H2 Transcription Factor Family AT3G18290 38.735 1.32e-51 183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0303 29 1796860 1802230 Lele31g1246 31 18726877 18729243 hybridization
Lele29g0303 29 1796860 1802230 Lele32g0282 32 1763347 1766004 hybridization