Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0292 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAACGTGAAGAAGGGGCCATGGTCGACAGAAGAAGATACGAAGCTGAAAGAGTACATAGAGAAGAACGGGACAGGAGGTAATTGGATCGCTCTTCCTCAGAAAGCAGGTCTAAAAAGGTGTGGGAAAAGTTGCAGATTGAGGTGGCTTAACTATCTGAGGCCCAACATTAAGCATGGAGAATTCTCCGATGAGGAAGACAGAATCATATGCACCCTCTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACAGACAATGATATTAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCATGGGTTTGCTTTCTCCATCATCTAATCATCAGATTCAGATCAGGAAACCTCCAACATTATTTCAAACCTCTCATAATCATCATGATCATCAAAGCCCACCATTATTTACTTGTCAATCATCATACAGAGACTTTAGCTCTAGTTATTACCCTAGCCCATCACCAACCATATCCTTCCCCGGCCTTGAGTCCACTACTGCTGTTAATTTGCCCTCAACTTATAACAACAACACAACTGCATCATCGCAAACCACCAATTTTCCTTATTTTCAGAACCAAGAGGCCTCCTTGGTTGGTGGTGGTGGTCCAATGCAATACTACTACATGTTTGGAAGTGAAGGAAGTTGCAGCACTTCATCTGATGGAAGTTGCAGTCAAATCAGCCATGGAAGAGGAGGAGACGCCAAACAAGTAGAAGAAATGGGTTTTCATCAATTCCATCGCAACTACATGCCCGGAGGTGATAAGTTCATGCCCGGAGGTGAAAGTAGTATTAACCAGTGGACGACGACAGAGAAGCCAAGTGGGTACTTTGGGCAAACCCCATTAATGGATTATGGAATTGAGGAGATAAAGCAGATGATCAGTGGTAATGATAATATTGAGGAAAACAAGAGAGAGGAAGAGAAGGGGATGATGTACTACTACTACTACTGA 1008 0.4355 MGRAPCCDKANVKKGPWSTEEDTKLKEYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLSPSSNHQIQIRKPPTLFQTSHNHHDHQSPPLFTCQSSYRDFSSSYYPSPSPTISFPGLESTTAVNLPSTYNNNTTASSQTTNFPYFQNQEASLVGGGGPMQYYYMFGSEGSCSTSSDGSCSQISHGRGGDAKQVEEMGFHQFHRNYMPGGDKFMPGGESSINQWTTTEKPSGYFGQTPLMDYGIEEIKQMISGNDNIEENKREEEKGMMYYYYY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0292 335 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele29g0292 335 CDD SANT 16 62 IPR001005 -
Lele29g0292 335 SMART sant 13 64 IPR001005 -
Lele29g0292 335 SMART sant 67 115 IPR001005 -
Lele29g0292 335 FunFam Transcription factor RAX3 7 68 - -
Lele29g0292 335 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele29g0292 335 FunFam Transcription factor RAX2 70 136 - -
Lele29g0292 335 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele29g0292 335 PANTHER OS09G0431300 PROTEIN 1 268 - -
Lele29g0292 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele29g0292 335 Gene3D - 69 136 - -
Lele29g0292 335 CDD SANT 70 111 IPR001005 -
Lele29g0292 335 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele29g0292 335 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele29g0292 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele29g0292 335 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0292 Lele-ChrLele29 1727345 1728956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0292 1 119 MYB Transcription Factor Family AT5G57620 89.076 5.13e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele29g0292 Myb_DNA-binding 3.1e-13 CL0123