Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0289 ATGTTTCATATTTTCGGGCTCGCAGTCGTTACGTACTCGCAGCTTCAGAGAGGCAATGCAGTCGTGTCTATGAAGAAATTTGACTTTGAAATGATGTTAAGGGCAGTTGAAAAGTATAGCGTGACTCGCTTGTGGCTTGTGCCTCCAATTATCCTTGCTCTGGCTAAACAAAGCGTGGTGAAGAAGTATAATCTTTCGTCATTGAAGCAAATTGGTTCAGGAGCTGCTCCTCTGGGGAAAGAATTAATGGAAGAGTGTGCTAAAAATTTCCCTCAAGCTTTGGTTATGCAGGGCTATGGCATGACAGAAACTTGCGGCATTGTATCTATGGAGAATCCAAGAATGGGTATTCGTCATAGTGGTTCGGCAGGAATGCTTGTTTCTGGAGTTGAGGCTCAAATAATCAATGTGGATACGCTGAAGCCCCTCCCCCCTCGTCAGTTGGGTGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATTACAACAATCCACAGGCCACCAGATCAACTATAGATAATATGGGATGGGTGCATACAGGAGATCTTGGATATTTTGATGAGGAAGGGCAACTTTATGTTGTTGACCGTATCAAAGAACTCATCAAATATAAAGGTTTTCAGGTTGCACCAGCAGAACTCGAAGGACTTCTTGTTTCTCATCCTGAGATAATGGATGCTGTTGTCATCCCATATCCTGATGCTGAGGCTGGTGAGGTCCCAGTTGCATATGTTGTCCGTTCGCCCAATAGTTCGCTGACTGAAGAAGACGTTCAGAAGTTTATTGTTGATCAGGTTGCACCTTTCAAAAGATTGCGAAGAGTGACATTCATCAATGCAGTTCTTAAGACAGCTTCTGGAAAGATTCTCAGAAGAGTGCTTGTTGAGAAAGCAAGATCCAAAATATGA 912 0.4342 MFHIFGLAVVTYSQLQRGNAVVSMKKFDFEMMLRAVEKYSVTRLWLVPPIILALAKQSVVKKYNLSSLKQIGSGAAPLGKELMEECAKNFPQALVMQGYGMTETCGIVSMENPRMGIRHSGSAGMLVSGVEAQIINVDTLKPLPPRQLGEIWVRGPNMMQGYYNNPQATRSTIDNMGWVHTGDLGYFDEEGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEIMDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIVDQVAPFKRLRRVTFINAVLKTASGKILRRVLVEKARSKI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0289 303 Pfam AMP-binding enzyme 1 205 IPR000873 -
Lele29g0289 303 Pfam AMP-binding enzyme C-terminal domain 214 289 IPR025110 -
Lele29g0289 303 Gene3D Luciferase; Domain 3 124 198 - -
Lele29g0289 303 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 298 - -
Lele29g0289 303 Gene3D - 199 302 IPR045851 -
Lele29g0289 303 Gene3D - 1 113 - -
Lele29g0289 303 SUPERFAMILY Acetyl-CoA synthetase-like 1 300 - -
Lele29g0289 303 FunFam 4-coumarate--CoA ligase 2 201 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0289 Lele-ChrLele29 1714101 1716818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0289 1 303 Monolignol Biosynthesis Gene Families AT4G05160 74.257 2.15e-174 492
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1139 11 18687622 18688546 Lele29g0289 29 1714101 1716818 CCT
Lele12g0183 12 1420046 1422254 Lele29g0289 29 1714101 1716818 CCT
Lele29g0289 29 1714101 1716818 Lele31g1262 31 18828070 18831552 hybridization
Lele29g0289 29 1714101 1716818 Lele32g0268 32 1666924 1671445 hybridization