Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0272 ATGAACGACATAATCAGGAGGGTTGCTTTGGTTTTCATTGTTGCATTAAGCTGCTATTCGGAGGAAGTTTCATGTCAGAGCACCAATAAAAGCCAAGCTGCGGTTCAGCTCGTAGCCCAGGCCGTTTACGGAAGCATGTCTAGTTTCACGGGCGTCTTCAAGGATGAAATAAAAAAGAATTTGGGTTTCTGCATTGTTGATGTAGATGCTGATTGGGATGGGGCATTTAATTTCACAAGTGATCTGACATTTTTGACCTCATGTTCCCAATCTTTAAAAGGAGATATTTCACAGCGAATATGCACAGCAGCAGAAATTAAGTTATATGCAAGTGGTTTTGACATAAAATCAAAGAGCCAAGCTAACAACTTGCAGCCAAACAAGAACTGTAACTTGAGCGTTTGGCTTAACGGATGTGAGCCTGGATGGGGCTGTATTGCTGCTGAGAAAGTTCAACTTAACAATACTAAGGACATCCCTGACAGATCTACTGACTGTCAGCCTTGTTGTCCGGGTTTCTTTTGCCCACGCGGCATTACTTGCATGATACCTTGCCCTTTGGGTTCTTACTGTCCACGTGCACAGCTAAATCAAGCCACTGGAATATGTGAACCGTATCATTATCAGCTACCTGCAGGAAAGACAGACCACAGTTGTGGGGGAGCAGATGTTTGGGCAGACATTTCAAGCAGTTGGGATGTTTTCTGTTCAGCTGGATCTTACTGTCCGTCCTCCATCCAAAAAAATCCTTGCACTCAGGGACATTATTGCAGGACGGGTTCAACCCATCAAGAAAGTTGTTTCAAACTGGCAAGTTGTAAGCCTCAATCAGCTAATCAAAATATAACTGCATATGGTGTCATGGTTTTTGTGATCATGGGCCCATCTGGGGCTGGTAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCATACAACTGGCTTAGTTCTTATAAATGGCAAGGTTGAATCTATCCGGTCATACAAGAAGATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTAGAAGAGAATCTGTGGTTCAGTGCCAGATGCAGACTTTCAGCTGATCTACAAAAAGCAGAGAAGGTTCTAGTAGTTGAAAGAGTTATTGAGTCGTTAGGTCTGCAAGCAATCCGAGATTCTCTGGTTGGAACGGTGGAGAGGCGTGGAATCTCTGGAGGTCAAAGAAAACGAGTGAATGTAGGACTGGAAATGGTTATGGAACCTTCACTCCTGATTTTAGATGAACCAACATCTGGTTTAGATAGTTCATCTTCTCAGTTATTGCTTAGAGCACTTAGACGAGAGGCTCTAGAAGGTGTAAATATATGCATGGTCCTTCACCAACCAAGTTACACACTGTTCAGGATGTTTGATGATTTTATACTACTCGCTAAAGGTGGTCTTATAGTTTATCTTGGACCTGTGAAGAAAGTTGAAGAGTATTTTTCCAGCTTGGGGATTGTTGTTCCTGATCGTGTTAATCCTCCAGATTATTACATAGACATTTTAGAAGGGATAGTAAAACCAAGCTCAAGCACAGCAGTAAACTATAAACAACTACCTGTTAGATGGATGCTTCACAATGGATATCCTGTTCCTCTGGACCTGCTTCAGGGTGTTGAAGGAATGGAAGGCGCAAGTGGTGAAAGTTCCACACATGGGGCAGCTACTCCAGCAGCAGAAACCGAAGACCCATCTTTAGCTGGGGAAATATGGCAGGATGTAAAAGTCCATGTTGAGAAGAAGAAAGACTACCTTAAATATACTTTCTTTACATCAAATGATTTATCTAATCGGGTAACCCCTGGAGTCTTCCAACAATACAGATACTTTCTCGGAAGGTCTGGTAAGCAGCGGCTACGAGAAGCTAGAACACAGGCTGTAGATTTTCTAATTTTGTTACTAGCTGGAATATGCTTAGGAACACTTGCCAAAGTGAGTGATGAAACGTTTGGAGCAAATGGTTACACATATACTGTTATAGCAGTATCTCTCCTGTGCAAGATCGCGGCTCTGCGAACATTTTCACTGGATAAGTTGCACTACTGGAGAGAGAGTGCATCGGGCATGAGTAGCCTGGCTTACTTTCTTGCAAAGGATACAGTTGATCATTTTAATACACTCATAAAGCCTGTGGTCTATCTCTCAATGTTCTATTTCTTCAACAATCCTAGATCTTCTGTTGTAGATAACTACTTTGTTTTGGTGTGCTTGGTGTACTGTGTCACTGGCATAGCTTATATATTGGCTATCTCACTTGAACCTGGCCCTGCCCAATTGTGGTCGGTGTTACTTCCAGTAGTTTTGACTCTTATAGCAACCAGTGATAGTGTAGCCGAGAGCTCATTCATGAGCAAGATAGCTGACGTTTGCTATGCAAAGTGGGCTCTTGAAGCATTTGTTATATCAAACGCTAAAAGATATGCTGGGGTTTGGTTAATAACCCGATGTGGCGCACTAAACATCCGTGGCTATGATCTCAACAACTGGTATCAATGTCTTATTTTTCTTGTGATAACCGGAGTGCTTAGTCGCATTGCGGCGTTCTTTTGTATGATCACTCTCCAGAAGAAATAA 2610 0.423 MNDIIRRVALVFIVALSCYSEEVSCQSTNKSQAAVQLVAQAVYGSMSSFTGVFKDEIKKNLGFCIVDVDADWDGAFNFTSDLTFLTSCSQSLKGDISQRICTAAEIKLYASGFDIKSKSQANNLQPNKNCNLSVWLNGCEPGWGCIAAEKVQLNNTKDIPDRSTDCQPCCPGFFCPRGITCMIPCPLGSYCPRAQLNQATGICEPYHYQLPAGKTDHSCGGADVWADISSSWDVFCSAGSYCPSSIQKNPCTQGHYCRTGSTHQESCFKLASCKPQSANQNITAYGVMVFVIMGPSGAGKTTFLSALTGKATGCHTTGLVLINGKVESIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLQKAEKVLVVERVIESLGLQAIRDSLVGTVERRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFRMFDDFILLAKGGLIVYLGPVKKVEEYFSSLGIVVPDRVNPPDYYIDILEGIVKPSSSTAVNYKQLPVRWMLHNGYPVPLDLLQGVEGMEGASGESSTHGAATPAAETEDPSLAGEIWQDVKVHVEKKKDYLKYTFFTSNDLSNRVTPGVFQQYRYFLGRSGKQRLREARTQAVDFLILLLAGICLGTLAKVSDETFGANGYTYTVIAVSLLCKIAALRTFSLDKLHYWRESASGMSSLAYFLAKDTVDHFNTLIKPVVYLSMFYFFNNPRSSVVDNYFVLVCLVYCVTGIAYILAISLEPGPAQLWSVLLPVVLTLIATSDSVAESSFMSKIADVCYAKWALEAFVISNAKRYAGVWLITRCGALNIRGYDLNNWYQCLIFLVITGVLSRIAAFFCMITLQKK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0272 869 MobiDBLite consensus disorder prediction 555 575 - -
Lele29g0272 869 Pfam ABC-2 type transporter 458 869 IPR043926 GO:0140359
Lele29g0272 869 ProSitePatterns ABC transporters family signature. 401 415 IPR017871 GO:0005524|GO:0016887
Lele29g0272 869 SMART AAA_5 286 487 IPR003593 -
Lele29g0272 869 Gene3D - 278 496 IPR027417 -
Lele29g0272 869 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 262 502 IPR003439 GO:0005524
Lele29g0272 869 Pfam ABC transporter 289 429 IPR003439 GO:0005524
Lele29g0272 869 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lele29g0272 869 FunFam ABC transporter G family member 24 278 496 - -
Lele29g0272 869 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 287 858 - -
Lele29g0272 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 498 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0272 Lele-ChrLele29 1610927 1616641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0272 292 490 Calmodulin-binding Proteins AT2G36910 27.523 1.45e-10 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0272 29 1610927 1616641 Lele09g1145 09 20565693 20567824 CCT
Lele29g0272 29 1610927 1616641 Lele10g1115 10 22526215 22531594 CCT
Lele29g0272 29 1610927 1616641 Lele11g1148 11 18753950 18758529 CCT
Lele29g0272 29 1610927 1616641 Lele12g0176 12 1359929 1363476 CCT
Lele29g0272 29 1610927 1616641 Lele31g1276 31 18922675 18928400 hybridization
Lele29g0272 29 1610927 1616641 Lele32g0256 32 1588735 1594504 hybridization