Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0264 ATGGATAGAGGTGAAACTGAAGCCACCTTCACCACAGAAATTTTGGAGAAAGGCGTTGACTGCACACCTTCAAATGATTTATCTACAGAGATCCCAGCAGATGAAGGAAAAATATGTCTCATTTGCAAATGTGGTGGGGGGCTCTTATTCTGTGATGGAAAAAACTGCGATGGATGCTACCATTTTTCTTGTCTTGAACCTCCCATGGTGGATGCTCTCCTTGGAGTTTGGCACTGTCACCTCTGTTTGAAGAAGAAGATAGAGTTAGGTGTATATTCTGTGTCTGAGGGAGTAGAATCAATTTGGGATGCCCGAGAAGTCAAGGTGTCTCATGCTGACGGATGGACAACTGAGAAGCATTTTCTTGTGAAGTATAAAGGCCTTGCTCATGTCCACAACCGTTGGGTCCCAGAAAGTCAATTACTTCTAGAAGCTCCTCCATCGCTGCTTGAGAAATTTAATCAGAAAGATCAGGTCTTAAATTTCTTAGCTCTGTTTTTGAAGTTCATGTTAGGTAAACCGGCCTTAAAGTGGAAGCAAGTATGGAGGTTACCTCATCGCTTGCTTCAGAAGAGATTGTGGATCTTTGCCCAGCAGGATGGTGATCCCAAGAATGGACAAGCTGTTGGTAATTCTGACTGTTATTATGAATGGCTTGTTAAATGGCATGGTCTTGGTTATGAACACTCATCATGGGAGCTGGACAATGCTTCATTTCTTCGTTCGCTTGAAGGTCAGAAGCTAATTAAAGACTATCATGATTGTCTTCAGAGGGCGAAGAGAGTTCCTTTATCATCCAAAGCAGATAAGAAACTAGACCGCATTAGTTCTTTTAGCAAATTATCTCAGACTCCTGGCGGATTTCCACCTGGATTTGGTATGAGCAATTTGGATGCAGTTAACAAGCTACGTGAGCGCTGGCACAAGGGTCAGAATGCTGTTGTATTTGATGACCACGACAGAATGATCAAAATGGTTGCATTTATCTTATCTTTGGACTCTAATAGTTGTCGACCTTTTCTCATTATCTCAACTTCTGCTGCTCTCCATTTATGGGAGGATGAGTTTTCTTGTTGGGCGCCATCTCTCAATGTTATTATTTACAGCGGAAACAAAGAGATTCGTAGAAGCATTAGGAAACTAGAATTTTATGAGGAAGGGGGCTGTCTGCTTTTCCAAGTACTGATAGTACTTCCTGAGATCATCATTGAGGATCTAGAGGTTTTAGAAGGCATAGAATTTGAAGCAATCATAGTTGATGAGTGCCAGGGCTCGAAGATCTCAACTTATTTGAAGCAAATTAGAATGTTGAAGACAGATTTGTGGATTCTTCTTCTCAGTGGCCAACTAAAGGATAATGTTGAAGAATATCACGATATCCTGGCTTTTCTTGATCATCAGAGTTACAATGAGGATAATGATGATTTAATCTCCAATTCCAGTGATATTGGTCAACTAAAGGATAAGCTATCAATCGTAGATAGTTATAATCAATTGTGCTGTAATCACCCCTATCTTGTTGATGAATCCCTACAAAGTTTACTTATCAAAGATCTTCCACCTGCCGAGATCCTGGATGTTGGAATAAAAGCAAGTGGGAAGCTGCAACTTCTTGATTCCATGCTCATGGAATTGAAAAAACAAGGTCTTAGGGTGCTTATTCTTTTCCAGGGATGTGTTGTTTGGAAGTCTTTGAGGCTTATTGGAATGTCTGTCCAATTGGACTTTCCAGAAAATTTTCTGATTACCAGAAAAATTTCTGTTCACTCGAAAATGGTCCAAGCGGATATCAAATTTATGCTAGAGAAACAAAGGTTTTTAGGTGGTTCTGGGAAGGTTTCGATTGGAGATATTTTGGATGACTTAATACGTCAAAGATTTGGTCCAGATTCTTATGAAAGAATTGACAAAGGTGTTATGAATTCTAAGAAGCAAAGTGCTCTGAAAATGTTTAATAAGAAGGACCATGGGAGATTTGTATTTTTATTAGAGACAAATGCTTGCCATCAAAGCATTAAATTGTCATCAGTTGATACCATTATCATATTTGATAGTGATTGGAACCCATTGAATGATATAAGATCCCTTCAGAAAATAACACTTGATTCACAGTTGGAACAGATTAAAATATTTCGGTTATATTCATCTTTCACTGTTGAAGAAAGAGCCCTAGTCCTTGCTAAGCAGGATAGACCACTTGATAGCAGATTAGGCTTAAGTTGGAGTGCCAGTCACACACTGTTGATGTGGGGCGCTTCGTCTTTATTTGATGATTTAAAAGATTTTCATGATTGTAAAGATGATATCTTAAGTGTGAATTCCTTATCTGGAGAATCATCTTTAGAACACGCTCTACATGAATTCTCATCCATACTTAAGCAAAATGGTGAAGATAATGACGCAAGGGACTGCTCATTTCTATTGAAAGTAAAGCAAAATGGATTGAAATACCACCCAACTTTTTCCTTGCTTGGTGAGCTGAAATTCAAGTCTCTGGATTCAGAGCCATGCCACTTGTTTTGGACTAAAGTTTTAGAGGGAAAAAATCCACGATGGAAATACTCATGTGGTTCATCTCAAAGGAGCCGAAAGAGGGTTCAGGTTTTTGATGGTTCAGGAAATAAGCCTGACCTTGAGAATGAAGAGGTAGTGAAAAATCGTGCAAAACTGACATTTAATGCTGATCAGCCTTATTTAAAACGTGAAGGTGAAAAATCTGCTGGAAACAAGGAAGGAAATTCTGGAGAACCAACTGAAAGACCTCAAGACAATGATGTTGAATTCCTGAAAGCAAGGATATCGCGTGATGAGCAAAATAGCTCACATCTTTCTCTGAAGTCAGAATTAGCTAAGCTTTGTGAAATCCTTCATGTCCCAGATAACGTCAAGAGGATGGCTGATGAATTTCTTGAGTATGTCATGAACAACCACCGTGTGGATAGTAGTACTCTTCCAAAGTCAATATTGGAGGCTTTTCAAATTTCTCTGTGTTGGATTGCAGCTGCTTTGGTAAAGCACAAGATTGACCATGAAGCTTCCCTTATGCTTGCAAAACAGCATTTAAAATTTGATTGTTGGAAGGATGAGGCAAACGTAATTTATTCAATGTTGCAGTGTCTGAAGAACTTATTTTTGCATCGAACAGGAAATTACAATGTCACTGGCTCTCCAAAAGCTTCTGCATCCGAAGCATCTGGTAAGAATTATTCCTGTACGGGCCTGGCTCTAGAGGTTGAATTAGCTGAGAAAGATGTGTTGGAAAGCATTAAAGACATTCGAAAGAAGTGCCAAAAGACGCTGAGGAAGTTACTTCTGAAGCATCAAGAAGAAAAGAACAAGCTGGATGCAACGTATGAGGAAAAAAAGGCCCATCTTGAGAGAGAATACAAAATAGAATCAGCCGTTATTCGGTCCTGTGCTCCCAATGATGTGATGAGATCAGAAAACCTTAAGGATTTAGATATCGAATATACAGGAAGAATTGAAGATTTGAAGCATCAGCATGAGATGTATCTCAAAGATCTTGAGAATGTCCAATCGATAGCAAGGCGAATGTTACAAAATAGGGAGGCCAGTTGGGTGGAAGATGTGAAGTCTTGGGCGCAAGATCAATTGTTAAACACACTTCCCTCGAAAGAACATGGGAATGGGATAGAATACTTGAAGACTAGACATAATGTCAACGGAGCCACGTGCATGATTAATGAAGGGGAAGGAAATAATATTTTTTATGATGGTTATAGGGAGAAAACTGTGCCTGATGGTTCAGAGAAGGATATAACTGTGGATCCTCCTCCATCCAGGGAACTAATTTCTGATGGAAGTCCATTGAATGTTTCAGATAGAGAGTTATCATCAAGACAACGTGAAAGTCCACTCTTGCCAGATCAGCAAACTTCTGATGGAGTCTCATTACACATGCACAATGGACAGGTTCCAATTGAAGTGCCTGAAACTAGTCGTGGAATAGTTGAATGCTATAATGGCAGGGAGCACCAAACAGATGCGGTATTGTTGGATCAAATTGCCACATCAGAGGAGCAGGAACAAATGTCAAGAACCATGAATCATAACACGTCCCAGTCACTGGTCAGGGAGCTTCTACAGCAGATGCCGCAACTTCCAATTGCAGAGCCCCCGAATCGATCTATGGCTCCTGAAATTGAAATTCGGTCAAGTAATGAAGATCCTCTGTATGGTCATGTTCCCCCTGCACCAATGGAGGTTACAAATCAGGCTATTGTTCATCCTTCCTCAAATTCTGAACCTGATTCACATGCACCTGTTGGTGCATTCAGAACGCAATCATTAGACACAAGAAATGTGTTCGCTCCTTCAGAGATCAATAATCATCTTAGACAAACTGCAACCCAATCAATGAACAGGATGCATTCCCCTTTGGTTAACGATCCATTAAAGAATGAATTGGACAGATTACATAAAGAATTGGAGCAAACCATGAGATACTACGAACATGTGAAATTGCAGTTGAAATCTGATTGTGCGAGAGAAATTGAGGAAATTCGCAGGAAGTATGATGTCAAGTTACAAGAGAGTGAGCTTGAGTTTCAACAGAAAAAGAAAAACCTGGATACAAATCTCAACTTAGTTCAGATGAATAAGATGTGGGCAGAGGCTTTTAGGTCTAAATGCATGGATCTTAGAGCATCTGGGGCACCAGGAATGCAGCAAGATCCAGGTTTGGCACAGCAATTGGCTTGGCTTTCACGACAGCAAAGAGACATGAGGCCTTCCCTTATTGAAAGTCCACCTCTTGGGCCTCCTGGATTTACCCCGCAGCATGTTGCCACTGCTGCTAGCTCTCAGGCCATGGCGCCACCTCACGTATCCAGTATGCCAATTTTTATGACACCTATGCCTGCTCCGGCTAGCCCTTTACCCATGGTGCCACCTATATCCTCTACAACTGGCTCACAGACCATGGCGCTGCCTCTACTGGCTGGTTACACTGCACCTCCAAGGCCACCCCATATCAACTCCATTTCTCCCTGGGCAAATCATCAAGCTGGTAGTGGGTTCCGTACCACTCCACCCCATCTCCAGCATTATAGACCCTCAACATCTTTGCCTGATTGGAGTCAACAAGCTCCTAATAACATTCCTGTAATGCCTTCATTACCTAACCGTCCTCGACCAACACTTCCAACAAATATATCTGATCCTCATAATAGAGTTCACCTGCCTGAAATTCCTGTACTGTTACCCAATCCTAGCTTGTCAGCCAGGGAGCCATCTATGGATGGTAATTCTCAACTGGGTATGAATCTGGCAAATACTCTGTTACGTTCCTCGAGTGCGACATCATTGCAGCAATCTGAGTTTGGCAACGCTACTAGAGTGCAAGATGACTGTGTTCGTCCGGCCATGTCGCACGACCTAGTCTGTTTGTCAGATGATGACTAA 5424 0.4122 MDRGETEATFTTEILEKGVDCTPSNDLSTEIPADEGKICLICKCGGGLLFCDGKNCDGCYHFSCLEPPMVDALLGVWHCHLCLKKKIELGVYSVSEGVESIWDAREVKVSHADGWTTEKHFLVKYKGLAHVHNRWVPESQLLLEAPPSLLEKFNQKDQVLNFLALFLKFMLGKPALKWKQVWRLPHRLLQKRLWIFAQQDGDPKNGQAVGNSDCYYEWLVKWHGLGYEHSSWELDNASFLRSLEGQKLIKDYHDCLQRAKRVPLSSKADKKLDRISSFSKLSQTPGGFPPGFGMSNLDAVNKLRERWHKGQNAVVFDDHDRMIKMVAFILSLDSNSCRPFLIISTSAALHLWEDEFSCWAPSLNVIIYSGNKEIRRSIRKLEFYEEGGCLLFQVLIVLPEIIIEDLEVLEGIEFEAIIVDECQGSKISTYLKQIRMLKTDLWILLLSGQLKDNVEEYHDILAFLDHQSYNEDNDDLISNSSDIGQLKDKLSIVDSYNQLCCNHPYLVDESLQSLLIKDLPPAEILDVGIKASGKLQLLDSMLMELKKQGLRVLILFQGCVVWKSLRLIGMSVQLDFPENFLITRKISVHSKMVQADIKFMLEKQRFLGGSGKVSIGDILDDLIRQRFGPDSYERIDKGVMNSKKQSALKMFNKKDHGRFVFLLETNACHQSIKLSSVDTIIIFDSDWNPLNDIRSLQKITLDSQLEQIKIFRLYSSFTVEERALVLAKQDRPLDSRLGLSWSASHTLLMWGASSLFDDLKDFHDCKDDILSVNSLSGESSLEHALHEFSSILKQNGEDNDARDCSFLLKVKQNGLKYHPTFSLLGELKFKSLDSEPCHLFWTKVLEGKNPRWKYSCGSSQRSRKRVQVFDGSGNKPDLENEEVVKNRAKLTFNADQPYLKREGEKSAGNKEGNSGEPTERPQDNDVEFLKARISRDEQNSSHLSLKSELAKLCEILHVPDNVKRMADEFLEYVMNNHRVDSSTLPKSILEAFQISLCWIAAALVKHKIDHEASLMLAKQHLKFDCWKDEANVIYSMLQCLKNLFLHRTGNYNVTGSPKASASEASGKNYSCTGLALEVELAEKDVLESIKDIRKKCQKTLRKLLLKHQEEKNKLDATYEEKKAHLEREYKIESAVIRSCAPNDVMRSENLKDLDIEYTGRIEDLKHQHEMYLKDLENVQSIARRMLQNREASWVEDVKSWAQDQLLNTLPSKEHGNGIEYLKTRHNVNGATCMINEGEGNNIFYDGYREKTVPDGSEKDITVDPPPSRELISDGSPLNVSDRELSSRQRESPLLPDQQTSDGVSLHMHNGQVPIEVPETSRGIVECYNGREHQTDAVLLDQIATSEEQEQMSRTMNHNTSQSLVRELLQQMPQLPIAEPPNRSMAPEIEIRSSNEDPLYGHVPPAPMEVTNQAIVHPSSNSEPDSHAPVGAFRTQSLDTRNVFAPSEINNHLRQTATQSMNRMHSPLVNDPLKNELDRLHKELEQTMRYYEHVKLQLKSDCAREIEEIRRKYDVKLQESELEFQQKKKNLDTNLNLVQMNKMWAEAFRSKCMDLRASGAPGMQQDPGLAQQLAWLSRQQRDMRPSLIESPPLGPPGFTPQHVATAASSQAMAPPHVSSMPIFMTPMPAPASPLPMVPPISSTTGSQTMALPLLAGYTAPPRPPHINSISPWANHQAGSGFRTTPPHLQHYRPSTSLPDWSQQAPNNIPVMPSLPNRPRPTLPTNISDPHNRVHLPEIPVLLPNPSLSAREPSMDGNSQLGMNLANTLLRSSSATSLQQSEFGNATRVQDDCVRPAMSHDLVCLSDDD 1807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0264 1807 ProSiteProfiles Chromo and chromo shadow domain profile. 96 158 IPR000953 -
Lele29g0264 1807 MobiDBLite consensus disorder prediction 1250 1264 - -
Lele29g0264 1807 Gene3D - 1468 1550 - -
Lele29g0264 1807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 90 IPR013083 -
Lele29g0264 1807 SMART chromo_7 181 257 IPR000953 -
Lele29g0264 1807 SMART chromo_7 95 158 IPR000953 -
Lele29g0264 1807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 471 IPR027417 -
Lele29g0264 1807 ProSitePatterns Zinc finger PHD-type signature. 39 82 IPR019786 -
Lele29g0264 1807 ProSiteProfiles Zinc finger PHD-type profile. 36 85 IPR019787 -
Lele29g0264 1807 Gene3D - 187 254 - -
Lele29g0264 1807 MobiDBLite consensus disorder prediction 1290 1305 - -
Lele29g0264 1807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 468 IPR014001 -
Lele29g0264 1807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 730 IPR027417 -
Lele29g0264 1807 MobiDBLite consensus disorder prediction 895 924 - -
Lele29g0264 1807 Gene3D - 297 490 IPR038718 -
Lele29g0264 1807 Gene3D - 97 159 - -
Lele29g0264 1807 Coils Coil 1502 1522 - -
Lele29g0264 1807 SUPERFAMILY Chromo domain-like 55 158 IPR016197 -
Lele29g0264 1807 Pfam SNF2-related domain 323 473 IPR000330 GO:0005524|GO:0140658
Lele29g0264 1807 SUPERFAMILY Chromo domain-like 212 254 IPR016197 -
Lele29g0264 1807 Coils Coil 1161 1181 - -
Lele29g0264 1807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 748 IPR001650 -
Lele29g0264 1807 Pfam Helicase conserved C-terminal domain 630 693 IPR001650 -
Lele29g0264 1807 PANTHER HELICASE PROTEIN MOM1 688 1807 IPR039322 GO:0031507
Lele29g0264 1807 Gene3D - 498 559 IPR027417 -
Lele29g0264 1807 Gene3D - 598 734 IPR027417 -
Lele29g0264 1807 MobiDBLite consensus disorder prediction 1246 1305 - -
Lele29g0264 1807 SMART PHD_3 38 83 IPR001965 -
Lele29g0264 1807 Coils Coil 1093 1124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0264 Lele-ChrLele29 1545503 1561169 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele29g0264 SNF2_N 6e-09 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0264 29 1545503 1561169 Lele31g1286 31 18989704 19007625 hybridization
Lele29g0264 29 1545503 1561169 Lele32g0248 32 1531818 1541345 hybridization