Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0259 ATGAAGCCCCAGCTCGAAGTTGTTCTTTCTTTTGTAATTTGCATGATCTTGCTTCGTTGCTCACTTTGTGATCAACAATCTGATACTTCTGGCCATAGCAAGTGGGAATGTAGATGTTCTTTCCAAGGGAACCAGGACTCTATTGCCAACTGTTCTGCATCCTGTGATTGTCGTTCAGATGCAAAGGAGAGTGGATCTATATGGACATGCATATGTGATCCCAACGGGTTTCCTAAAGTGCAAGAAGATGGCCATAGTCCTAATTGCTTTACAGCCTGCAACTGCACATGGGGATCTCTCACCATGCCACAAGGTTCAAAGAAACACATATCCAGCAAGGTTATAATAATCATTCTATTAGCATGTGTTTTATGTACAACTATTGCATTTCTAGCCTCGTTCACTTGCTATGTCTGCTGGAAGGACCGATGTCCTATTCAACCGCCAATATTCTCATCAGATAAGGAAACAAGTTGCAATAGTACCACCAACTTAATTAGTAACAGGACTTCATCAGTGCTAGAAACAAAATTTGCCATAAATTCTCCCATTAATAATATTACAGGGTGCTTTAAGAAGGCCTCTTTCTTGTTTGGGACCAGAACAGAGACTTGTCAAGGCAAAATTATTCAATTTTCATTTGCTGAATTGGAAAATGCAACTGAAAACTTTTCAGCTTCCAATCTTATTGGACTAGGTGGAAGTAGCTATGTATATCGTGGTCAGCTTAAAGATGGAAGTAATGTGGCAATTAAGCGACTAAAATCTCAAGGGGGCCCTGAAGCCGACTGCGTAATTTTGACAGAGATTGAACTATTATCTAGACTCCATCATTGCCATCTTGTGCCTTTACTTGGATACTGTTCAGAACTAAAAGGGAAACATGTTGAAAGGCTACTAGTATTTGAGTACATGGCCAATGGCAATTTGAGGGACTGTTTGGACGGAGTTTCTGGAGGAATTATGGATTGGGCTACTCGGGTTACAACTGCAATGGGAACTGCAAGAGGCTTGGAATATCTCCATGAGGCGGCAGCTCCAAGAATTCTGCACAGAGATGTGAAATCAACTAATATTCTTCTGGATGAAAATTGGCAGGCAAAAATAACTGACCTTGGCATGGCTAAAATCTTGAGAGTTGATGAACCCCCAAGCTGTTCAAATTCCCCAGCAAGAATGCTGGGGACGTTTGGCTATTTTGCACCTGAGTATGCAATATTTGGAAGAGCCTCTCCTAAGTCTGATGTCTTCAGTTTTGGCGTGGTTCTTCTTGAGCTCATGAGTGGTCGGCATCCTATCCACAAATCCACAGGCAAAGAAGAAAGCCTCGTCATATGGGCTACACCTCGCTTGCAAGATAGTAAGCGAGTGATAACAGAGTTGGCCGATCCACATTTGAATGGAAACTTCCCTGAAGAAGAAGTGCAGATAATGGCATATTTAGCAAAGGAGTGTTTGCTGCTGGATCCTGATGCTAGGCCAACCATGAGTGAAGTTGTTCAAATTCTTTCAACAATATCACCTGCTAAATCTAGGAGGAGAATAAACATTCCAGTGAGCCTTTTTCAGGAACCTCAGGATTCAGAAATTCAAATGCAAGCTCCGTCTAGTGAATCTTCGGGTCAAAATTCATTGCCATTAGGTATTAACCATAATCCGATTGTTGGGAACAAAAGTGAAGAAGTAGAAACAGTTTCATCTGAGTATAAGGAGAGTTTGATCCTCTTGACTTCTAAAAAAGAGGGTTTGCATGGATCAGATGATGAAACCAAAAGCATACGAGATTCCGATTCTGCTTTATTTGGAGAGGAATCGGACGAGATGCTCATACAAGCTCACAAAAAGGTTTATGTTTTGATTTTGGTGATAGGAACTTGTTCGACATTGGTAATGGCCGGAAAAGCAGCAACGACTTCGACGACCTACTCGCCGTCTCCGACTACCCAGAAAACCAAGGCTCCTATTTTCAATGAAGATTGGGTCCGACCCGATGGCCGTGGCTTCCACCAGTGCAGGCCTGCCTTTTTCAGAACTGGTGCTGTGAATGCTGCCTCTGGATCTGCTTATGCAGAATTTGGAAACACAAAGGTCATTGTGTCTGTGTTTGGGCCAAGGGAGAGTAAGAAGGCCATGGTGTACAGTGACATAGGGCGTCTAAATTGCAATGTAAGCTTTACAACATTTGCAACTCCCGTTCGTGGCCAGGGATTGGACAACAAAGAATACACTGCAATGCTTCATAAGGCTTTGGAGGGTTCAATAATGTTGGAAACTTTTCCCAAGACCACTGTGGATGTTTTTGCATTGGTACTGGAATCTGGTGGCAGTGATCTCCCAGTTGTCATATCATGCGCTAGCCTTGCCCTAGCAGATGCTGGAATAATGATGTATGACCTTGTTGCCTCAGTTTCTGTGTCTTGTCTCGGTAAGAACCTGGTAATTGATCCTATTTCGGAGGAGGAAAGCTCTCAAGATGGAAGCTTTATGATAACTTGCATGCCTTCTCGTTATGAAATCACCCAGCTCACCGTTACTGGGGATTGGTCCACCCCAAAGGTTAACGAGGGAATGCAACTATGCTTAGATGCTTGTGCAAAGCTTGCAAAGATCATGAGGTCATGTCTGAAAGAATCTGCTCAATGTTCACAAGAATAG 2655 0.429 MKPQLEVVLSFVICMILLRCSLCDQQSDTSGHSKWECRCSFQGNQDSIANCSASCDCRSDAKESGSIWTCICDPNGFPKVQEDGHSPNCFTACNCTWGSLTMPQGSKKHISSKVIIIILLACVLCTTIAFLASFTCYVCWKDRCPIQPPIFSSDKETSCNSTTNLISNRTSSVLETKFAINSPINNITGCFKKASFLFGTRTETCQGKIIQFSFAELENATENFSASNLIGLGGSSYVYRGQLKDGSNVAIKRLKSQGGPEADCVILTEIELLSRLHHCHLVPLLGYCSELKGKHVERLLVFEYMANGNLRDCLDGVSGGIMDWATRVTTAMGTARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKILRVDEPPSCSNSPARMLGTFGYFAPEYAIFGRASPKSDVFSFGVVLLELMSGRHPIHKSTGKEESLVIWATPRLQDSKRVITELADPHLNGNFPEEEVQIMAYLAKECLLLDPDARPTMSEVVQILSTISPAKSRRRINIPVSLFQEPQDSEIQMQAPSSESSGQNSLPLGINHNPIVGNKSEEVETVSSEYKESLILLTSKKEGLHGSDDETKSIRDSDSALFGEESDEMLIQAHKKVYVLILVIGTCSTLVMAGKAATTSTTYSPSPTTQKTKAPIFNEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDIGRLNCNVSFTTFATPVRGQGLDNKEYTAMLHKALEGSIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLGKNLVIDPISEEESSQDGSFMITCMPSRYEITQLTVTGDWSTPKVNEGMQLCLDACAKLAKIMRSCLKESAQCSQE 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0259 884 FunFam receptor-like serine/threonine-protein kinase NCRK 198 304 - -
Lele29g0259 884 CDD RNase_PH_MTR3 671 877 - -
Lele29g0259 884 Pfam Protein kinase domain 227 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0259 884 Gene3D Transferase(Phosphotransferase) domain 1 305 519 - -
Lele29g0259 884 ProSiteProfiles Protein kinase domain profile. 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0259 884 PANTHER OS01G0750732 PROTEIN 27 527 - -
Lele29g0259 884 ProSitePatterns Protein kinases ATP-binding region signature. 230 252 IPR017441 GO:0005524
Lele29g0259 884 SUPERFAMILY Ribonuclease PH domain 2-like 796 879 IPR036345 -
Lele29g0259 884 FunFam Exosome complex component RRP41-like 641 880 - -
Lele29g0259 884 Pfam 3' exoribonuclease family, domain 1 670 794 IPR001247 -
Lele29g0259 884 SUPERFAMILY Protein kinase-like (PK-like) 207 503 IPR011009 -
Lele29g0259 884 FunFam receptor-like serine/threonine-protein kinase NCRK 305 515 - -
Lele29g0259 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
Lele29g0259 884 MobiDBLite consensus disorder prediction 526 546 - -
Lele29g0259 884 Gene3D - 648 883 IPR027408 -
Lele29g0259 884 Gene3D Phosphorylase Kinase; domain 1 198 304 - -
Lele29g0259 884 SMART serkin_6 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0259 884 CDD STKc_IRAK 230 503 - -
Lele29g0259 884 SUPERFAMILY Ribosomal protein S5 domain 2-like 656 822 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0259 Lele-ChrLele29 1517136 1525887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0259 1 523 Receptor kinase-like Gene Family AT2G28250 57.736 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Lele29g0259 Pkinase 6.8e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0259 29 1517136 1525887 Lele31g1292 31 19043499 19054074 hybridization
Lele29g0259 29 1517136 1525887 Lele32g0244 32 1495538 1504532 hybridization