Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0246 ATGGCGATGGCTGTGGTTCCCCAGAGAGAAAGCAGCAGCGGGAGCATTGGCAAGCACCTTGATTCCGGCAAGTATGTGCGATATACGGCGGAGCAGGTTGAAGCGCTCGAACGCGTTTACGCAGAGTGCCCGAAGCCCAGCTCCTTGCTCAGGCAACAACTGATTCGAGAATGCCCTATTCTTGCCAACATCGAACCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGGTGTAGAGAGAAGCAAAGAAAGGAGTCAGGGCAGCTTCAAACAGTGAACAGAAAACTGTCTGCGATGAACAAGTTGTTGATGGAGGAAAATGAGCGGTTGCAAAAGCAGGTCTCCCAATTAGTATGCGAAAATGGTTTCATGAGGCAGCAATTGCATAGTCCGTCAGCAGCAACTACTGATGCAAGTTGTGATTCGGTGGTCACTACACCTCAAAACTCCATAAGAGATGCCAATAACCCTGCTGGACTCATATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGAATGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCGCAAAGTTGCAGTGGAGTGGCGGCTCGAGCTTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCCTGAAAGATCGTCCATCTTGGTTTCGGGACTGTCGGAGTTTAGAAGTTTTTACAAAGTTCCCTGCTGGAAATGGTGGCACAATTGAACTCGTGTACACACAGACATATGCCCTAACTACTTTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATATACTACAAGTTTGGACAATGGAAGCCTTGTGGTTTGTGAGAGATCACTGTCTGGTTCAGGTGCTGGCTCTAACGCAGCTGCTGCTGCTCAGTTTGTTAGAGCTGAAATGCTCCCATGTGGCTACCTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATCGTAGACCACTTAAATCTCGAGGCATGGAGTGTGCCTGAGGTGCTGAGACCACTTTATGAAGCATCGAAATTGGTTGCTCAAAAAATGACAATTGCAATAGCTCAGGAAACAAGTGGCGAAGTTGTTTATGGTTTAGGTAGGCAGCCTGCTGTTCTGCGATCATTCAGCCAAAGGCTGAGCAGAGGCTTCAATGACGCTGTCAATGGATTTAATGATGATGGCTGGTCCATAATGAACTGCGATGGTGCTGAGGACGTGATTATTGCAGTCAACTCAACCAAGAATCTGAGTTCCACTTCTAATCCTGCAAGCTCCCTAACATTCCTTGGAGGAGTTCTTTGCGCGAGAGCTTCCATGCTGCTCCAGAATGTTCCTCCAGCAGTTTTGGTTCGGTTTCTGAGGGAGCACCGCTCTGAGTGGGCCGATTTCAATGTTGATTCCTATACTGCTGCATCTCTTAAAGCAGGCTCCTTTGCCTATCCTGGCATGAGGTCAACTAGATTCACGGGAAGTCAAATTATCATGCCTCTTGGCCATACAATTGAACATGAAGAGATGCTTGAAATTGTCCGTCTTGAAGGCCTCCCTCTTGCTCAGGAAGACGGTTTTGCTTCTAGGGACATTCATCTCTTACAGATATGTGGTGGGATTGATGAAAATGCTGTTGGGGCATGTTCTGAGCTCGTATTTGCTTCAATTGATGAAATGTTCCCTGATGATGCTCCATTGTTGCCCTCGGGTTTCCGCATCATCCCATTGGATTCAAAATCAGGCAATAAGAAGGATGCAGTATCTGTAAATCAGACCCTAGAATTGACATCTGGTCTTGAAGGGGGCCCAGCAAGAAATCATGCTGCAGGAGATGCATCATCTTGCCATAATACTCGGTCGGTGTTGACTATTGCCTTTCAGTTTCCTTTTGAGAGCAGCTTGCAGGAGAACATTGCCATTATGGCACGGCAGTATGTGCGCACTGTGATTTCATCCGTGCAGAGGGTTGCCTTGGCCATATCTCCATCTGGTATAATCCCGCCTGTGGGACCAAAACTCAGTCCTGGCTCTCCTGAAGCAGTCACTCTAGCTAACTGGATATGCCGGAGTTATAGGCAAGTCTGCATATTATCTGATAATCATGCTCTTGTCGGTGATTCGATGCTGAAACATTTATGGCATCATCAGGATGCCATTTTGTGTTGTTCGTCTCTGCCTGTGTTCCTCTTTGCAAACCAGGCGGGGCTTGACATGCTGGAAACAACTCTAGTAGCTTTGCGAGATATCACATTAGATAAAATATTTGACGACTCAGGACGCGAGGCATTGTGTACAGAATTCGCCAAGTTGATGCAGGAGGGGTTAGCTTATCTGCCTGCGGGAATTTGCATGTCCATGATGGGACGGCATGTTTCGTTTGAACAAGCTGTGGCGTGGAAAGTTCTTGCTGAAGATAACAGCCTTCATTGCCTAGCATTCTCTTTCATAAATTGGTCATTTATATGA 2493 0.4725 MAMAVVPQRESSSGSIGKHLDSGKYVRYTAEQVEALERVYAECPKPSSLLRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKESGQLQTVNRKLSAMNKLLMEENERLQKQVSQLVCENGFMRQQLHSPSAATTDASCDSVVTTPQNSIRDANNPAGLISIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRPSWFRDCRSLEVFTKFPAGNGGTIELVYTQTYALTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGAGSNAAAAAQFVRAEMLPCGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYEASKLVAQKMTIAIAQETSGEVVYGLGRQPAVLRSFSQRLSRGFNDAVNGFNDDGWSIMNCDGAEDVIIAVNSTKNLSSTSNPASSLTFLGGVLCARASMLLQNVPPAVLVRFLREHRSEWADFNVDSYTAASLKAGSFAYPGMRSTRFTGSQIIMPLGHTIEHEEMLEIVRLEGLPLAQEDGFASRDIHLLQICGGIDENAVGACSELVFASIDEMFPDDAPLLPSGFRIIPLDSKSGNKKDAVSVNQTLELTSGLEGGPARNHAAGDASSCHNTRSVLTIAFQFPFESSLQENIAIMARQYVRTVISSVQRVALAISPSGIIPPVGPKLSPGSPEAVTLANWICRSYRQVCILSDNHALVGDSMLKHLWHHQDAILCCSSLPVFLFANQAGLDMLETTLVALRDITLDKIFDDSGREALCTEFAKLMQEGLAYLPAGICMSMMGRHVSFEQAVAWKVLAEDNSLHCLAFSFINWSFI 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0246 830 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Lele29g0246 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 830 IPR044830 GO:0003700
Lele29g0246 830 SMART HOX_1 21 87 IPR001356 GO:0003677
Lele29g0246 830 Gene3D - 18 90 - -
Lele29g0246 830 SMART START_1 162 372 IPR002913 GO:0008289
Lele29g0246 830 Pfam START domain 163 368 IPR002913 GO:0008289
Lele29g0246 830 Pfam MEKHLA domain 691 829 IPR013978 -
Lele29g0246 830 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Lele29g0246 830 Gene3D - 197 367 IPR023393 -
Lele29g0246 830 Coils Coil 89 120 - -
Lele29g0246 830 SUPERFAMILY Homeodomain-like 23 86 IPR009057 -
Lele29g0246 830 CDD bZIP 76 115 - -
Lele29g0246 830 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Lele29g0246 830 ProSiteProfiles START domain profile. 153 350 IPR002913 GO:0008289
Lele29g0246 830 SUPERFAMILY Bet v1-like 162 351 - -
Lele29g0246 830 CDD homeodomain 24 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0246 Lele-ChrLele29 1428165 1433802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0246 1 830 Homeobox Transcription Factor Family AT5G60690 77.948 0.0 1352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele29g0246 START 2.1e-45 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0246 29 1428165 1433802 Lele31g1304 31 19138846 19144677 hybridization
Lele29g0246 29 1428165 1433802 Lele32g0233 32 1398642 1404379 hybridization