Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0238 ATGACGAAGGACGTGGAGGGGGCGGAGCAAGGAGAGTTCTCGGCGAAGGACTACCACGAGCCACCACCGGCGCCGTTGATAGACCCGGAGGAGCTGGGGAAGTGGTCGTTTTACAGGGCGTTGATAGCGGAGTTCGTGGCGACGCTGCTTTTCCTGTACGTAACGGTGTTGACGATCATTGGGCAAGGCAGCTCGACGGACGCTAACAAGGGCCACGGCGACTGCGATGGCGTCGGCATCTTGGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGCATCTCTGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTGGGGCGGAAGGTGTCGCTGATAAGGGCGGTCTTGTACATGGTAGCACAGTGCGCCGGAGCAATCTGCGGTACCGGACTCGCCAAGGGCTTCCAAAGAGCCTACTACGACCGGTACGGCGGCGGCGTCAACTACGTCCAGCCCGGCTACAACAAAGGCACCGCCCTGGGCGCCGAAATCATCGGCACCTTCGTCCTCGTCTACACCGTCTTCGCCGCCACCGATCCCAAGCGCAACGCCCGTGACTCCCATGTTCCTGTGTTGGCTCCGCTTCCCATTGGATTCGCCGTCTTCATGGTTCACTTGGCTACAATTCCGGTCACCGGTACCGGTATCAACCCTGCAAGGAGTTTCGGAGCTGCCGTAATCTATAATGGTGACAAAGCCTGGGATGATCATTGGATTTTCTGGGTTGGCCCAGCCATTGGAGCCTTTGCTGCTGCAGTATACCACCAGTACATTCTGAGAGCCGCGGCCATTAAAGCTCTCGGATCCTTCAGGAGCAACAATTAA 858 0.5862 MTKDVEGAEQGEFSAKDYHEPPPAPLIDPEELGKWSFYRALIAEFVATLLFLYVTVLTIIGQGSSTDANKGHGDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYMVAQCAGAICGTGLAKGFQRAYYDRYGGGVNYVQPGYNKGTALGAEIIGTFVLVYTVFAATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNGDKAWDDHWIFWVGPAIGAFAAAVYHQYILRAAAIKALGSFRSNN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0238 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 MobiDBLite consensus disorder prediction 1 24 - -
Lele29g0238 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Lele29g0238 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 MobiDBLite consensus disorder prediction 1 16 - -
Lele29g0238 285 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lele29g0238 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 274 IPR034294 -
Lele29g0238 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0238 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Lele29g0238 285 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0238 Lele-ChrLele29 1377173 1378879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0238 1 283 Major Intrinsic Protein MIP AT5G60660 78.445 8.07e-163 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1173 11 18958216 18967432 Lele29g0238 29 1377173 1378879 CCT
Lele12g0150 12 1145529 1153666 Lele29g0238 29 1377173 1378879 CCT
Lele09g1172 09 20795677 20798433 Lele29g0238 29 1377173 1378879 CCT
Lele10g1150 10 22775939 22776933 Lele29g0238 29 1377173 1378879 CCT
Lele29g0238 29 1377173 1378879 Lele31g1311 31 19184351 19186058 hybridization
Lele29g0238 29 1377173 1378879 Lele32g0225 32 1346909 1348711 hybridization