Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0232 ATGGCTCCGCCGCTGACTAAGGGTATCAGCAAGTTGGGGTTTGTGCGCCAGTTAAAACAGAGTGGGAGGCTGAACAGAAACTTGCCCATAAATATGGCTTGGAGTGTGGAGAATTCTGAGGTGCGTGTTGAAAGCAAGATTGGAGCGGTTCGTCCAGCAGAGGATGCTTTTGCTGCAGAAGCAGTTGAAGCTTTGAAAGCTGGGAAGGTTATTGCTGTATCCACTGATACACTCTATGGGTTCGCTTGTGATGCTTGCTCGTTGGAAGCAGTTAACCGAATTTATGAGATTAAAGGACGTAAACACACAAGCCCCTTGGCAATTTGTGTTGGGGATGTGTCGGACATAGAGCTTTTTGCAGTGACTGACTATTTGCCTGACGGTCTGCTTGATTCCCTCCTTCCAGGTCCTGTTACTGTTGTGCTGAATCGAGGAGAATCAAGCATTCTTGAACGATCTTTGAACCCAGGACTTCATAGCATAGGGGTTAGAGTGCCTGACAGCAATTTCATTCGGGTCATTGCTCGTGGCTCAGGAACTGCCTTGGCCCTCACCAGTGCAAACCTAAGTGGACAATCAAGTAGTGTTTGCATCAAGGATTTTGAGGACCTCTGGCGACATTGTGCCTATGTCTATGATGGTGGTTTGCTTCCATCAGGACGTGCAGGTTCCACTATTGCGGACCTCACCGTTCCATCCAAGTACAAGATACTCAGACCTGGAAGTGCAAAGGAAGAGACAGTGGCCATCTTGGAGAAGCATTCTCTGGTTGAAGTAAATGAGCAGTGA 789 0.4804 MAPPLTKGISKLGFVRQLKQSGRLNRNLPINMAWSVENSEVRVESKIGAVRPAEDAFAAEAVEALKAGKVIAVSTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDIELFAVTDYLPDGLLDSLLPGPVTVVLNRGESSILERSLNPGLHSIGVRVPDSNFIRVIARGSGTALALTSANLSGQSSSVCIKDFEDLWRHCAYVYDGGLLPSGRAGSTIADLTVPSKYKILRPGSAKEETVAILEKHSLVEVNEQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0232 262 SUPERFAMILY YrdC/RibB 58 247 IPR017945 -
Lele29g0232 262 ProSiteProfiles YrdC-like domain profile. 55 243 IPR006070 GO:0003725
Lele29g0232 262 Gene3D DHBP synthase 45 254 - -
Lele29g0232 262 TIGRFAM TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 58 248 IPR006070 GO:0003725
Lele29g0232 262 Pfam Telomere recombination 63 241 IPR006070 GO:0003725
Lele29g0232 262 PANTHER SUA5 45 254 - -
Lele29g0232 262 FunFam YrdC N6-threonylcarbamoyltransferase domain containing 49 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0232 Lele-ChrLele29 1349925 1352281 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0232 29 1349925 1352281 Lele31g1317 31 19211326 19213654 hybridization
Lele29g0232 29 1349925 1352281 Lele32g0221 32 1317179 1326146 hybridization