Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0231 ATGGCGGAAACTGGAAATACTGAACTTTCACTTTCAACCTCTAAAACCCTAAACCCTTCTGATCCAATAAATGGTTCTCATTCGTCCCAAGTGCCCGCTGAAAACGCTCAAATCCATCAGGTATCTTCGTCTCCCGCCGCCCAGTCTCCCGATGAGGTCGTATTGGGCGAGAAGCGGAAGCGCGAGGACTCAGACTCAGGGGTCTCGGATCCTTCCCTCAATCCCTTGTGGAAAACCAGCCTCTGTTCTTATTTCCGGCAACAAGATAGCTCCTGCAGCCACGGCAGTGACTGCCGCTATGCCCACGGCGAAGAGGAGCTTCGGCCTCGGCCCGATAGCACCTGGGACCCAACGTCTGACCGGGCGAAGAAGGCAATGAAATCCGATACGGGCAAGAAATGTACAGTTTCCTTGGGTGTAATGATGACGGAGGCTTTGGTCGATGATGCTGATGGCGAGGACAATGATGATTCCAATCACGCTCTTAGCAAATGCTTGGTGCATTTGCCCAGGAAGTGGGGTTCGGACGACTTGAGGAAATTTCTCAATCAAGAGGGGATACCTTCTAAATCTGCAAAGAAAAAGAAAGGAATGCTGGTAGGATTTGTCACTTTTGAAGATCAAGAACAGTTGAAGAGCTCAACAAAGGAGCTGGAAGGCAAATTAATTGGCAGCAAAAGTTTAAAAGTTGCAGATGTCATTCCTCGATCATTTGAAAAGAATGTTACTCTTTGTGCAGAATCTGCACAAAATGCAGATGCTGCATTAGCTAAGGAGAATACAGATGGGAATGTGGATAGTGAGACAAATGGTGCAAATTTGGCGGTTGGTGATTCCAAGCCGAAGACAAGAAGCCTCCGTGACGTAGTTACTCCTCTTGCTCATATGGCCTATGGTGATCAGCTAGAGCACAAAAAAGGCTCTCTCTCTCAGATTCTCAAAAGACTTACTAGAAATGCTCGTAAAGCTTGTCCCAGTGGTGTTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGCGGTCTTCCTTGCAAACTAGAAGGTATTATTGGATCACCAAGGGTAAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAATAACAGTAGGATTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGACTGCCTCCATACTTCAACAATTGCTCTCCAATATGCTTCTATCTTTCAGGAATTTCTGCAGCATTCACAGTTACCAATTTGGAACAGATTTAAGAATAGCGGGTTTTGGCGTCAATTGACAGTTCGAGAGGGAAGGAAAAATGATAAGGTTGCTAATGCTGAAGATTCTGGTGGTATCGCAGAGGTCATGCTTATGGTGCAGGTTTCTACAATGGGCTTTGATAATGCGCTAGTAACTGGTGAATTTGACAAACTCGCTCAAGCATTTGTCGCCGGAGCTAATGCATGTTCTCCATCATTGCCTCTCACGGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCACCAGCCGATGCCCCCCTGCGATCACTTCTCACGCCTAAAGCAGTTGGTGATCAAATAAATGAAAAAGATGGTACCATGGATGTGAGGATCCATGATTATATCAGCAATCTCAAGTTTTCTATATCTCCGACTGCATTTTTCCAGGTCAACACTCTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATTTGCTGTGGGACAGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGCGTTGAAATGAATGCTTCTGCTGTGTCTGATGCTCAAAGGAACGCTGAGATTAACGGCATAAAGAATTGTAGATTTATATGTGCAAAGGCAGAGGATGTGATGGGATCTTTGTTAAAGGAGTACCTAAATAAGCCTAAGGAACAAGTTGACGTTCCTAGCATCTGTGGAACTGATGCTGAGGAAATTTCTGAGGGGAGTATATGCCATGAAGCTGAAAATGGTGAACAAGAATCTCTCTGTCCTGAAAATGGCAGGCAAGAAGGTGAAATTGAGGTTAAGAGAGGGAGCGATTCTGAAAACGGAAATTCTTTGATGCAGCAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCGCGTGCTGGACTGCATCCAACTGTGATCAAAGCTCTGAGGACTAATCAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGAAAGTTTGGTAGCAAATGCCATTGAGCTTTGCGCACCATCTCCTGTGAAAATGGAAAAAGGAAATAAAAACAAAGGATGGAGAAACATGAGCAGTGCTGGTCTTGCAAGACATAGAGCTAAGTCTATGCCTATCTCGGAGGCCTTCCAGCCCATAAAAGCCATGGCCGTTGATCTATTCCCGCATACTGAACACTGTGAACTGGTGATGCTCCTCGAGAGTGAAAGATCTGAAGTTGATTTCCTTTTCCTTCTTTTTCTCTCTGTTTCCTGCTGCTGGCGCTTGACACTTGCTTCTTTTGATAAGAAAAAGCCCGTCAGTGAAGGACATGATTCGGTTTCGTGTCTAAGAACAGCTTCTCTTCCAGCTCACAAGATTAATAATACAATGGGAATAAGTGAAGAGTACACACATGCTCGTCGCTGGAAGCGAGAGAATCTTTCACTGCAAATACCCTCAAGAACAGCAGAAGAGTCTTCTCATGATTTTGTAACAATCAAGATGCCTCAGACTCCAAGTCCTTCTCCAACTCCCAAGAGAGTAAATTTTCTGGTGACTTCTCTCTCTGTTGATACCTCCATTAATAAGTCTCCAGGACCTTCAGTATCAAGAGGAAGACCATCCATAAGAAGTCTCTTCCCGAAACTGAGCTTTATTTCTCGGGCGTCATCAGATGTTGAAAAGGCTTCTATTGCAGCTTCAGAAGGTTCCTCTTCAGGGACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCTTTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCATGCTGGAACTGTTGGCACTCCTTTGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCAGTGCCTGTCAACAATAAAGAGAAAAGCTTAAGGAGAATGGATTTATTTTACCGTGTTATTCCTTCAACACCACGAGTGAAGGATGGAATTGAATTATCCACAACATCCCCCACAAAGGATTCTGAAAATGATGTTGCCGATGGTGAAGATATAGCTGAAGAAGAAGCTGTATGTAGAATTTGTATGGTTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGTGCTATTAAGTGGTTTAGCATCAAAGGAAACAAAACATGTGATGTGTGCAAGCAGGAGGTTCGAAACCTACCTGTCACTCTTCTGCGGATCCAAAGTGTCCGGGCTCGACATACTGGAGCAGGCTGGTCACCGCTGGACAATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTTTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTAATGCAATTGCCATATCTCTTCCGTTTTCATGTGTATTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATATATGCATCAGCACAGTTTGCGCTGGTGGTTCTATTTGCTCATATATTTTACTCCTTGATCCATGTGCAGGCGATCCTGGCAATACTTCTTGCAACATTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTCTGACGGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAGCAGAATAATAATGGCCCTCAACTGATGGCACCTAATTCAGGCTCTTCCACGGCCAGGGCGCAGAGTCACCAAAACTCAAGTCAGATACCGTCACAGGCTAATAATGAGAGTGATTCTTCATAA 4089 0.4453 MAETGNTELSLSTSKTLNPSDPINGSHSSQVPAENAQIHQVSSSPAAQSPDEVVLGEKRKREDSDSGVSDPSLNPLWKTSLCSYFRQQDSSCSHGSDCRYAHGEEELRPRPDSTWDPTSDRAKKAMKSDTGKKCTVSLGVMMTEALVDDADGEDNDDSNHALSKCLVHLPRKWGSDDLRKFLNQEGIPSKSAKKKKGMLVGFVTFEDQEQLKSSTKELEGKLIGSKSLKVADVIPRSFEKNVTLCAESAQNADAALAKENTDGNVDSETNGANLAVGDSKPKTRSLRDVVTPLAHMAYGDQLEHKKGSLSQILKRLTRNARKACPSGVSLPEWILKSRDIGGLPCKLEGIIGSPRVNGYRNKCEFSVGYSVEGKITVGFMLGNFREGVTAVEEAVDCLHTSTIALQYASIFQEFLQHSQLPIWNRFKNSGFWRQLTVREGRKNDKVANAEDSGGIAEVMLMVQVSTMGFDNALVTGEFDKLAQAFVAGANACSPSLPLTALVVQDHQGISNVAPADAPLRSLLTPKAVGDQINEKDGTMDVRIHDYISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEINGIKNCRFICAKAEDVMGSLLKEYLNKPKEQVDVPSICGTDAEEISEGSICHEAENGEQESLCPENGRQEGEIEVKRGSDSENGNSLMQQFKNVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPESLVANAIELCAPSPVKMEKGNKNKGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLESERSEVDFLFLLFLSVSCCWRLTLASFDKKKPVSEGHDSVSCLRTASLPAHKINNTMGISEEYTHARRWKRENLSLQIPSRTAEESSHDFVTIKMPQTPSPSPTPKRVNFLVTSLSVDTSINKSPGPSVSRGRPSIRSLFPKLSFISRASSDVEKASIAASEGSSSGTREKPSISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTPLQRSSAQRQIVRSLSVPVNNKEKSLRRMDLFYRVIPSTPRVKDGIELSTTSPTKDSENDVADGEDIAEEEAVCRICMVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVRNLPVTLLRIQSVRARHTGAGWSPLDNVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTNAIAISLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLIHVQAILAILLATFAGFGVVMSGSSILTEFFRWRRRWQALSEQNNNGPQLMAPNSGSSTARAQSHQNSSQIPSQANNESDSS 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0231 1362 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 289 830 IPR010280 GO:0006396|GO:0008173
Lele29g0231 1362 Gene3D - 70 110 - -
Lele29g0231 1362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 292 828 IPR029063 -
Lele29g0231 1362 CDD RING_CH-C4HC3_MARCH 1116 1164 - -
Lele29g0231 1362 SMART c3hfinal6 76 104 IPR000571 GO:0046872
Lele29g0231 1362 CDD RRM_SF 165 230 - -
Lele29g0231 1362 MobiDBLite consensus disorder prediction 261 276 - -
Lele29g0231 1362 MobiDBLite consensus disorder prediction 1 49 - -
Lele29g0231 1362 Pfam RING-variant domain 1116 1163 IPR011016 GO:0008270
Lele29g0231 1362 Pfam tRNA (Uracil-5-)-methyltransferase 715 765 IPR010280 GO:0006396|GO:0008173
Lele29g0231 1362 ProSiteProfiles Zinc finger RING-CH-type profile. 1108 1170 IPR011016 GO:0008270
Lele29g0231 1362 SUPERFAMILY RING/U-box 1112 1167 - -
Lele29g0231 1362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1102 1171 IPR013083 -
Lele29g0231 1362 MobiDBLite consensus disorder prediction 1 72 - -
Lele29g0231 1362 MobiDBLite consensus disorder prediction 103 128 - -
Lele29g0231 1362 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Lele29g0231 1362 MobiDBLite consensus disorder prediction 261 280 - -
Lele29g0231 1362 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 829 IPR045850 -
Lele29g0231 1362 SUPERFAMILY RNA-binding domain, RBD 168 237 IPR035979 GO:0003676
Lele29g0231 1362 SUPERFAMILY CCCH zinc finger 75 108 IPR036855 GO:0046872
Lele29g0231 1362 MobiDBLite consensus disorder prediction 53 67 - -
Lele29g0231 1362 CDD AdoMet_MTases 588 660 - -
Lele29g0231 1362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 104 IPR000571 GO:0046872
Lele29g0231 1362 Gene3D - 153 241 IPR012677 -
Lele29g0231 1362 ProSitePatterns RNA methyltransferase trmA family signature 1. 725 757 IPR030390 -
Lele29g0231 1362 SMART ringv_2 1115 1164 IPR011016 GO:0008270
Lele29g0231 1362 MobiDBLite consensus disorder prediction 1324 1362 - -
Lele29g0231 1362 Gene3D Vaccinia Virus protein VP39 527 829 IPR029063 -
Lele29g0231 1362 Pfam Methyltransferase domain 586 646 IPR025714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0231 Lele-ChrLele29 1335786 1348843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0231 1102 1170 C3H Transcription Factor Family AT2G37950 44.286 2.96e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele29g0231 tRNA_U5-meth_tr 4.1e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0231 29 1335786 1348843 Lele31g1318 31 19214788 19220572 hybridization