Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0230 ATGGATTTGCAGTTTATTCTGTCTCGACACCTGGAATTTGGTCGTGGAAAATTTCCGGGAGCTCTAGCTAGTTGGCTGGAAGATGAAGAGAAAGTGAAGAAGTTTTTGAAAATGAATTCAAGGGAAGGAGTGAATGATGGTCGAACTAGAATTGAACCAAATGATTCTCTTCTTCCTGGTCTTAGTGATGATGTTGCCCTGAATTGTCTTGCGTGGGTTAGTAGATCGGATTATGCTTCTCTATCTTGTATAAATAAAAGATACAGTAAGCTGATTAAAAGTGAGTATTTATATGGGTTGAGGAAACAATTGGGACTTGTGGAGCATTGGGTTTATTTGGTGTGTGATCCAAGGGGATGGGAGGCATTTGACACCATGAAAAAGAAATGGATGGCATTACCTAAGATACCGTGTGATGAATGCTTCAACCATGCAGACAAGGAGTCCTTGGCTGTGGGCAGTGAGCTACTGGTATTTGGTCGGGAATTGTTGGATTTTGCTATTTGGAAATATAGCTTGATTTTTCATGGTTGGGTTAAGTGTCAGGGGATGAATCTGCCGCGCTGTTTGTTTGGATCTGGTAGTCTCGGCTCAATTGCGATTGTTGCAGGTGGAAGTGATAAAAATGGAAATGTTCTAAAATCAGCTGAGTTGTATGACTCTTCGTCTGGTAGATGGGAACAGTTACCAAACATGCACACGCCACGTAGATTATGCTCTGGTTTTTTCATGGATGGCAAATTCTATGTTATTGGTGGAATGTCAAGTCCTACAGTTTCATTGACCTGTGGAGAGGAGTATAATCTTGAGACGAGAAGTTGGCGGAAAATAGAGGATATGTATCCATTTGTTAATGGAGCTGCTCAGGCACCCCCACTTGTGGCCGTTGTGGACAACCAGTTATTTGCTGTGGAGCATCTAACCAACATGGTGAAGAAGTACAACAAGGTAAATAATGCCTGGGATGAATTGGGAAGGCTTCCAGTCCGGGCTGATTCTTCTAATGGATGGGGCTTGGCTTTCAAGGCTTGTGGGAAGCACCTTCTCGTCGTGGGTGGTCAGAGAGGTCCTGAAGGTGAAGCTGTTGTGCTGAATTCCTTTTGCCCTGCATCAGGGGTAAAAAATGGCACCTTAGATTGGCAGGTTCTTGCTGTGAAGGAGCATGTTGGGGTGTTTGTGTACAATTGTGCTGTTATGGGTTGTTGA 1206 0.4362 MDLQFILSRHLEFGRGKFPGALASWLEDEEKVKKFLKMNSREGVNDGRTRIEPNDSLLPGLSDDVALNCLAWVSRSDYASLSCINKRYSKLIKSEYLYGLRKQLGLVEHWVYLVCDPRGWEAFDTMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELLDFAIWKYSLIFHGWVKCQGMNLPRCLFGSGSLGSIAIVAGGSDKNGNVLKSAELYDSSSGRWEQLPNMHTPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLETRSWRKIEDMYPFVNGAAQAPPLVAVVDNQLFAVEHLTNMVKKYNKVNNAWDELGRLPVRADSSNGWGLAFKACGKHLLVVGGQRGPEGEAVVLNSFCPASGVKNGTLDWQVLAVKEHVGVFVYNCAVMGC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0230 401 SMART kelc_smart 247 299 IPR006652 GO:0005515
Lele29g0230 401 SMART kelc_smart 199 246 IPR006652 GO:0005515
Lele29g0230 401 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 52 401 - -
Lele29g0230 401 SUPERFAMILY Kelch motif 118 356 IPR015915 GO:0005515
Lele29g0230 401 FunFam F-box/kelch-repeat protein SKIP11 103 385 - -
Lele29g0230 401 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Lele29g0230 401 Pfam Kelch motif 235 280 IPR006652 GO:0005515
Lele29g0230 401 SUPERFAMILY F-box domain 53 142 IPR036047 GO:0005515
Lele29g0230 401 Gene3D - 107 381 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0230 Lele-ChrLele29 1330317 1331904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0230 52 278 Miscellaneous Gene Families AT4G33900 25.991 4.89e-13 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0230 29 1330317 1331904 Lele09g1170 09 20781131 20790113 CCT
Lele29g0230 29 1330317 1331904 Lele10g1145 10 22756102 22766959 CCT
Lele29g0230 29 1330317 1331904 Lele11g1173 11 18958216 18967432 CCT
Lele29g0230 29 1330317 1331904 Lele12g0150 12 1145529 1153666 CCT
Lele29g0230 29 1330317 1331904 Lele31g1320 31 19234625 19236746 hybridization
Lele29g0230 29 1330317 1331904 Lele32g0219 32 1301267 1311554 hybridization