LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g0229	ATGTTCAAAAAGAGTTTCTCTATTGCAATAGCGATGGACTGCTGTGGTTGCTTTGGGTTCATAAGAAAATTCAAACGTCGCAGAAATCAGTCTGGCTTCAAGAGAAATCTCTCACAGGAGCTATTGTTGGATGAAACTGACGACAGAGATGATGATGGATCCTATAATGGTGATGTTACTGACACCATTAGTGGAGACGATAGTGAAGTTCCAATTTGTGCCAAACGTTCTGAGGAAATTTTAATGTTGAGAGAAGAGAAAGATATGATTTGTAGGCAGTTTCCTGTTAAGGAAACTCACAAAGTTTTTCGCTCAGAGGATGAAAATGGTAACAAGATGGTAAATGAATATGTTCGGGAGTACAAGATTGGTTCTGGTAGTTATGGGAAAGTGGTTTTATACCGAAGTTGTGTGGATGGAAAGCATTATGCAATCAAGGCCTTTCATAAGTCTCACTTACAGAAGCTTCGGGTTGCACCCTCAGAGACTGCCATGACTGATGTTCTGCGGGAGGTACTCATTATGAAAATGCTGGAACATCCTAACATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCAGATCACTTCTACATGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCCTTCTTCTAGCTTGGGTGAGGAGACTGCTAGGAAATACTTGCGTGATATAGTTTCAGGATTAAGATACCTTCATACTCATAATATAGTGCACGGGGATATTAAACCTGATAATCTGTTGGTTACTCGTCATGGTACAGTAAAGATTGGGGATTTCAGTGTTAGCCAGGCTTTTGAGGATGATAATGATGAACTTCGCCGATCACCTGGGACTCCTGTTTTCACTGCTCCAGAATGTTGTTTAGGTCTTACCTATAACGGCAAAGCTGCAGACACATGGGCAGTTGGAGTTACTTTGTACTGCATGATCTTGGGTGAATACCCATTTCTTGGAGACACGCTTCAAGATACTTATGACAAAATAGTCAATAATCCTTTAGTGCTCCCAGCTGATTTGAATCCCCAAATAAGGAACTTACTGGAAGGATTACTTTGCAAAGATCCAAAACATCGGATGACATTGGGTGATGTTGCACAGCATAGCTGGGTTATCGGAGATGATGGGCTAATTCCTGAATATTTGTGTTGGTGCAAACGCAAGAGATTAGGAGGAGGAGGAGATTTAAATAGCAACAATATACTTGCTTGA	1218	0.4113	MFKKSFSIAIAMDCCGCFGFIRKFKRRRNQSGFKRNLSQELLLDETDDRDDDGSYNGDVTDTISGDDSEVPICAKRSEEILMLREEKDMICRQFPVKETHKVFRSEDENGNKMVNEYVREYKIGSGSYGKVVLYRSCVDGKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMEGKWVCEGSGPSSSLGEETARKYLRDIVSGLRYLHTHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECCLGLTYNGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPADLNPQIRNLLEGLLCKDPKHRMTLGDVAQHSWVIGDDGLIPEYLCWCKRKRLGGGGDLNSNNILA	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g0229	405	FunFam	Serine/threonine-protein kinase GRIK2	107	396	-	-
	Lele29g0229	405	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	82	374	-	-
	Lele29g0229	405	Gene3D	Transferase(Phosphotransferase) domain 1	209	378	-	-
	Lele29g0229	405	ProSitePatterns	Protein kinases ATP-binding region signature.	123	146	IPR017441	GO:0005524
	Lele29g0229	405	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Lele29g0229	405	FunFam	Serine/threonine-protein kinase Ssp1	111	209	-	-
	Lele29g0229	405	SMART	serkin_6	117	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g0229	405	Pfam	Protein kinase domain	117	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g0229	405	CDD	STKc_LKB1_CaMKK	123	373	-	-
	Lele29g0229	405	Gene3D	Phosphorylase Kinase; domain 1	111	208	-	-
	Lele29g0229	405	ProSiteProfiles	Protein kinase domain profile.	117	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g0229	405	SUPERFAMILY	Protein kinase-like (PK-like)	108	382	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g0229	Lele-ChrLele29	1317089	1320509	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g0229	123	373	CBL-interacting serine-threonine protein kinases	AT5G10930	33.074	4.35e-42	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Lele29g0229		Pkinase	3.3e-53	CL0016