Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0218 ATGGCCACCAACCGTTTCGTGTGCGAAATCTGCAAGAAGGGGTTCCAGAGAGACCAGAATCTGCAGCTGCACCGCCGCGGCCACAACCTGCCCTGGAAGCTCCGGCAGAGAAGCGACAAAGAAGCAGTCATCAAGAAAGTGTACGTGTGCCCCGAAAAGACGTGCGTCCACCACGATCCTTCCAGAGCCCTGGGAGACCTCACCGGGATCAAGAAGCACTACAGCAGAAAACATGGCGAGAAGAAGTGGAACTGCCACAAGTGCTCCAAGAAATACGCCGTTCACTCCGACTGGAAGGCACATATCAAGATTTGTGGCACCAGGGAGTACAAATGTCACTGTGGCACTCTTTTCACCAGGAAAGACAGCTTCTTGACACACAGAGCTTTCTGTGACGTCTTGGCGGAAGAAAGTGCGCGAATAAGCTTCGTTCCATCAGAAGCGCCTAGAATCCCTCAGGTTTTTACTGGGCATTATCCGGGGTATGGAGGTTCATCAGAAACAGTACTGATCCAGGCCAATTCTAGCGTGCCTGATTTGATGCAGACGATGAACATGCTGCCGACTTCGTCTTCGTCGTCCTCGTGGGTGAAACCATACACAGAAGCATCATTCGAAAGTTTTGCCAATCTAGCCGTGCCTGGGGTATCTTGCCTACTGAAGGAAGAGGAAGAAGAAGAGAACAAAGGAGGGTTGTCGTATAGCGCAAGGTCTTTGTATGGTAGTAATTATCAAAAGCCATCGCAAGTAGGCTTGACTCAGCCTCATCACATGTCGTCATCACCCACTTCACTGTTACAAAAAGTAACGCAGATGGGATCTACAGGAAGAAACCATATCGACATTTTTGGATTCCTCTCCAACAGCAGCACCACGACGACGTTTAGAAATGGCGATCAAAACTTGAGCGATTTGGTGATCTCACAAGGAAACACCAATAATGTTGGAGTTGGAGGTGGTCATGATGAAGGTCATGGATTGGTATTGAATGATTGGAACTCGAGCCAGCTTGTGAGAAGCGGCGAGAATTTAGATCAAATGGAATTGGGTGGTTTAACCAGAGATTTTCTGGGCGTTGGTCACAAAGAGTTAGCCAACTTTAATGCAATCGGCTCGGCTCCTCAGCCATGGAGCTGA 1137 0.4908 MATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSDKEAVIKKVYVCPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWNCHKCSKKYAVHSDWKAHIKICGTREYKCHCGTLFTRKDSFLTHRAFCDVLAEESARISFVPSEAPRIPQVFTGHYPGYGGSSETVLIQANSSVPDLMQTMNMLPTSSSSSSWVKPYTEASFESFANLAVPGVSCLLKEEEEEENKGGLSYSARSLYGSNYQKPSQVGLTQPHHMSSSPTSLLQKVTQMGSTGRNHIDIFGFLSNSSTTTTFRNGDQNLSDLVISQGNTNNVGVGGGHDEGHGLVLNDWNSSQLVRSGENLDQMELGGLTRDFLGVGHKELANFNAIGSAPQPWS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0218 378 Gene3D Classic Zinc Finger 60 140 - -
Lele29g0218 378 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 362 IPR031140 -
Lele29g0218 378 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele29g0218 378 FunFam protein indeterminate-domain 5, chloroplastic-like 61 140 - -
Lele29g0218 378 Gene3D Classic Zinc Finger 6 54 - -
Lele29g0218 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Lele29g0218 378 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Lele29g0218 378 SMART c2h2final6 48 78 IPR013087 -
Lele29g0218 378 SMART c2h2final6 83 103 IPR013087 -
Lele29g0218 378 SMART c2h2final6 6 28 IPR013087 -
Lele29g0218 378 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0218 Lele-ChrLele29 1274029 1275248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0218 1 145 IDZ Gene Family AT3G45260 82.069 1.13e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0218 None None None