Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0199 ATGGATTACATCGACAACTTGCCGCCGATGGATCTGATGCGCTCCGAGAAAATGACCTTCGTTCAACTTATCATGCCCGTCGAGTCCGCTCATCGAGCTATCTCTTATTTGGGCGAACTTGGCCTCCTCCAATTCCGAGATTTGAACGATGATAAAAGCCCCTTCCAAAGAACCTTTGCTAATCAGGTAAAGCGGTGTGCAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATTAATAAAGCTGGTGGTATGTGTTCTCCTGGCCTTGCCTTGCAACCTGATATTGAGTTAGAGGAACTAGAGATACAGCTTGCTGAACATGAACATGAGCTAAATGAAATGAACTCTAATAGTGAGAAACTTCAGCAGTCATATAATGAGCTCCTGGAGTTCAAGATTGTATTGCAAAAGGCATGTGGTTTTCTTGCATCAAGTCATAGCCATGCTGCTATAGAGGAGAGAGAACTGGAGGAGCATGTATACTCTAATAATGATGATTATGTTGAGAATGCATCTTTGCTTGAACAGGAAACAAGGCCTGGATCGTCAAATCAATCTGGTTTAAGATTTATCAGTGGGATAGTTTGTAAATCTAAAGTTCTTAGGTTTGAAAGGATGCTTTTTCGTGCTACAAGAGGCAATATGCTTTTCAACCAGGCACCAGCTGATGAACAAATCATGGATCCTATTTCAACAGAGATGGTTGAGAAAACAGTGTTTGTTGTATTTTTCTCCGGGGAGCAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTACCCTGTGCCTGAAGATATACATAAACATAGGCAAATAACTAGGGAGGTTTCATCCCGTCTTGTTGACTTAGAAGCAACTTTGGATGTTGGTATTAGGCACAGGAATAAGGCCCTTGCTTCCATAGGAGGTCATTTAGCAAGATGGATAAATATGGTAAGAAGAGAGAAGGCTGTGTATGATACACTCAACATGCTTAATTTTGATGTCACAAAAAAATGCCTTGTTGGAGAGGGATGGTGCCCCATATTTGCAAAAACACAGATCCAGGAGGCACTGCATCGTGCAACTTTTGATAGTAATTCTCAAGTTGGCATAATCTTTCATCCAATGGATGCAGTGGAATCACCACCTACTTATTTTAGAACCAACCGCTTCACCAGTGCTTTCCAGGAAATTGTTGATGCATACGGTGTTGCAAGATATCAAGAAGCAAATCCTTCAGTTTACACAGTAATTACATTCCCATTTCTTTTTGCTGTGATGTTTGGGGACTGGGGTCATGGAATCTGCCTGTTGCTAGGAGCATTATTTCTAATAGCGCGTGAAAGCAAGCTCAGCACACAGAAACTCGGAAGCTTTATGGAGACGCTATTTGGAGGGCGCTATGTGCTTCTTTTGATGGCACTGTTTTCAATTTATTGTGGGCTAGTCTACAATGAATTCTTCTCTGTTCCTTTTCACATTTTTGGTAGATCTGCTTACGATTGCCGAGATACTTCATGCAGGGATGCACATACTGCTGGCTTAGTCAAATACCATGATACATATCCGTTTGGTGTGGATCCCAGCTGGCGAGGAAGTCGATCAGAATTGCCTTTTCTGAACTCACTCAAGATGAAGATGTCCATTCTTTTGGGAGTGGCACAAATGAACTTAGGAATTCTATTAAGTTACTTCAATGCTCGTTTCTTTGGTAACTCAGTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTACCTTTCCCTTCTCATTATTGTTAAGTGGTGTACTGGGTCTCAGACAGACCTCTATCATGTAATGATTTACATGTTTTTAAGTCCCACTGACAATCTTGGTGAGAATCAGTTGTTCTGGGGCCAAAGGTTTCTTCAGATTGTGTTATTGCTGTTGGCTGTAGTTGCTGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTAAAGAAGCTTCAAACAGAGAGATATCAAGGAAATGCTTATGATAGGCTTAACACATCCGAGATGGATCTTGAGGTGGAACCAGATTCTGCTAGGACTAGGCAACACCATGAGGAATTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATCCACTCCATTGAGTTTGTCCTTGGCGCAGTTTCAAACACAGCATCGTACCTTAGACTCTGGGCGTTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAAAAAGTCCTCCTCCTTGCTTGGGGGTATGACAATCTGGTCATTCGGTTAGTGGGCCTAGCTGTTTTTTCGTTTGCAACTGCCTTTATACTACTAATGATGGAGACGCTAAGTGCTTTCCTACATGCCCTGCGTCTTCACTGGGTGGAATTTCAAAGTAAATTCTACCATGGGGATGGCTACAAGTTCAGACCCTTTTCCTTTGCCTCATTAGCAGAGGATGATGATTGA 2466 0.4165 MDYIDNLPPMDLMRSEKMTFVQLIMPVESAHRAISYLGELGLLQFRDLNDDKSPFQRTFANQVKRCAEMSRKLRFFKDQINKAGGMCSPGLALQPDIELEELEIQLAEHEHELNEMNSNSEKLQQSYNELLEFKIVLQKACGFLASSHSHAAIEERELEEHVYSNNDDYVENASLLEQETRPGSSNQSGLRFISGIVCKSKVLRFERMLFRATRGNMLFNQAPADEQIMDPISTEMVEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDIHKHRQITREVSSRLVDLEATLDVGIRHRNKALASIGGHLARWINMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALHRATFDSNSQVGIIFHPMDAVESPPTYFRTNRFTSAFQEIVDAYGVARYQEANPSVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLSTQKLGSFMETLFGGRYVLLLMALFSIYCGLVYNEFFSVPFHIFGRSAYDCRDTSCRDAHTAGLVKYHDTYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVAQMNLGILLSYFNARFFGNSVDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQTDLYHVMIYMFLSPTDNLGENQLFWGQRFLQIVLLLLAVVAVPWMLFPKPFILKKLQTERYQGNAYDRLNTSEMDLEVEPDSARTRQHHEEFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQSKFYHGDGYKFRPFSFASLAEDDD 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0199 821 PIRSF ATP6V0A1 8 821 IPR026028 GO:0000220|GO:0046961
Lele29g0199 821 Pfam V-type ATPase 116kDa subunit family 36 813 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele29g0199 821 PANTHER VACUOLAR PROTON ATPASES 12 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele29g0199 821 Coils Coil 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0199 Lele-ChrLele29 1157548 1165333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0199 2 814 Primary Pumps ATPases(2) AT2G28520 80.713 0.0 1351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0199 29 1157548 1165333 Lele09g1198 09 20931760 20942696 CCT
Lele29g0199 29 1157548 1165333 Lele10g1175 10 22939396 22948718 CCT
Lele29g0199 29 1157548 1165333 Lele11g1199 11 19132395 19141930 CCT
Lele29g0199 29 1157548 1165333 Lele12g0121 12 974398 983394 CCT
Lele29g0199 29 1157548 1165333 Lele31g1352 31 19413064 19420944 hybridization
Lele29g0199 29 1157548 1165333 Lele32g0189 32 1135035 1144714 hybridization