Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0197 ATGGTGGGTATTCGACTTCGAGATGGGTTTCCTGACATTTACAGGAGAGAGGTGGGCTTGTCCCATCCTCGCGAGTTTGCTCGACGATTTTCAGCTTCCGAGGCCATAGTAAAGCAAATGAATTTGTATGGGAAGTTAAATGGTCATGATGGTTGCGTAAATGCAGTGGAGTTTAACTCTACTGGCGATCTGCTTGTCTCAGGTTCTGATGACCAGCAAGTTATGTTTTGGAATTGGGCGTCCAAACGTAAGTTGTTTGAATATCCTTCTGGTCACTCTGACAACATATTTCAGACAAGAATTATGCCATTTTCTGACGACCGCAAAATAGTGACTTCCGCTGGTGATGGCGAGGTAAGGCTTGGCCATCTCTCAGATGATGGTACGATAGAAACTACAATGTTGGGGAAGCACCAAGGTTCTGTATACAAGCTTGCTTTGGAGCCAGGAAGTCCTCACATACTGTATAGCTGTGGTGAAGATGGTTTTATTCAACATTTTGATCTGCGAAGTAGTTCTGCTACAAAACTTTTCCGTTGCTTCTCATTGACAGGGAATAATAAGCAATCTTCAAGCAGGATAAGGTTGAATTCAATTGTGATTGATTCAAGAAATCCAAATTACTTTGCAGTTGGAGGATCGGATGAATATGCACGTGTTTATGACATGAGAAAATGCCAATTGGATGCGACAAGTAATTCAGATAGACCTGTTAACACATTTTGTCCTCATCACTTAATTGGCTCAAATCATGTCCATATCACAGGGTTGGCTTACTCAAGCCAGAGCGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATTTATTTCAGAAGAACATGGGGTTGGGTGGTTCACCTTCCTCTGCTACACCTGAGGAGTTAAATATATTTCAACAGGCACGGGTTTACTCCGGTCATAGAAATGCACGGACAGTTAAAGGAGTGAGCTTCTTTGGCCCTAATGATGAGTATGTTTTGAGTGGGTCAGATTGTGGTCATATTTTCATCTGGAAGAAGAAGGATGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACAAGTTGTAAATCAACTTGAGACCCACCCACATATTCCAATTCTTGCTACTTGCGGTATTGAAAATGATGTGAAAATCTGGGTTCCTCAAGCGAGTGATATTCCTCCAGTTCCTGGAAATGTAGAAGAGATAATGGAGGCAAATAGACATGGGAGAGAAGATCGATCACGTGTAACTCTTACTCCTGATGTTGTAATGCATGTTCTGCGCTTGCAGAGGCGGCAGACATTGGCATATATTGAAAGAAGTTACAGCAGCGCAGCTGATATAGTGAGTGATGAAGAAAATGCAGAGGGCTACTTCTTCTGA 1368 0.4225 MVGIRLRDGFPDIYRREVGLSHPREFARRFSASEAIVKQMNLYGKLNGHDGCVNAVEFNSTGDLLVSGSDDQQVMFWNWASKRKLFEYPSGHSDNIFQTRIMPFSDDRKIVTSAGDGEVRLGHLSDDGTIETTMLGKHQGSVYKLALEPGSPHILYSCGEDGFIQHFDLRSSSATKLFRCFSLTGNNKQSSSRIRLNSIVIDSRNPNYFAVGGSDEYARVYDMRKCQLDATSNSDRPVNTFCPHHLIGSNHVHITGLAYSSQSELLVSYNDELIYLFQKNMGLGGSPSSATPEELNIFQQARVYSGHRNARTVKGVSFFGPNDEYVLSGSDCGHIFIWKKKDAKLVRLMVGDQQVVNQLETHPHIPILATCGIENDVKIWVPQASDIPPVPGNVEEIMEANRHGREDRSRVTLTPDVVMHVLRLQRRQTLAYIERSYSSAADIVSDEENAEGYFF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0197 455 SMART WD40_4 39 78 IPR001680 GO:0005515
Lele29g0197 455 SMART WD40_4 176 222 IPR001680 GO:0005515
Lele29g0197 455 SMART WD40_4 81 123 IPR001680 GO:0005515
Lele29g0197 455 SMART WD40_4 128 168 IPR001680 GO:0005515
Lele29g0197 455 SMART WD40_4 342 381 IPR001680 GO:0005515
Lele29g0197 455 SMART WD40_4 234 278 IPR001680 GO:0005515
Lele29g0197 455 SMART WD40_4 297 339 IPR001680 GO:0005515
Lele29g0197 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Lele29g0197 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Lele29g0197 455 SUPERFAMILY WD40 repeat-like 38 380 IPR036322 GO:0005515
Lele29g0197 455 Pfam WD domain, G-beta repeat 299 339 IPR001680 GO:0005515
Lele29g0197 455 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Lele29g0197 455 Gene3D - 31 383 IPR015943 GO:0005515
Lele29g0197 455 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 12 446 IPR045151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0197 Lele-ChrLele29 1146561 1149173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0197 44 256 Eukaryotic Initiation Factors Gene Family AT2G46290 22.374 1.54e-06 48.1