Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0196 ATGGAGATCTCTGTTGAATCTTGCATATTCCTCAATGCAATTGCAATCTTTTCCTTTGTTTTGTTGATCACTGTATCCATTGAGTGCATGTGTCGGACTATAATTATCAAGGGACAGTGGGCATTGGTATCAAACTTGTATTTTTCATACTGTCATGACTGCTATTCGTTTTCATCTCCTCTAACGACAATCATGAGTGACGAAGGAGAAAGGACTTGTCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACAGAGGGGAGATGCCCTGCATGTCGAACTCCATATGACAAGGAGAAGATTGTAGCGATGGCTGCAAACTGTGAGAGATTGGTGGCAGAAATTAATACTGAAAGGAAGACGAAGAGTCAGAAAGCAAAGTCTAAGTCTTCTGAAGGCCGGAAGCAGTTGAGCAGTGTGCGAGTTATTCAGCGTAATCTTGTCTATATAGTTGGATTGCCACTTAATCTGGCAGATGAAGAAGTAAAATTCTTTCCTTCTCTCCACAAGCAATTGAATACTGTCTCTTCATGTGGATTTTTTTTCTATTGCTTCTTCATGTTCCTTAAGAGTGTAGTATTATTTTCATCATCAATTGTGCAGATTCTTCAGCGGCGAGAGTATTTCAGTCAGTATGGGAAACTCTTGAAAGTGTCAATGTCTCGGACAGCAACTGGTGTTGTTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGATGAAGCAATTCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCCGAAACATGGTACACAATCCCGATTGTTTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAGTTCAACAAATTACGGGTGCCACCAATAATATACAACGGCGGTCAGGGAATGTGTTGCCACCCCCAGTTGATGATTACATGAACCATTCTGCTGGAAAACCCATTGTGAAAAATGCCACGAATAATTCAACTAGCACTGCAAGAGGTTCACCTCCAAATGGAAGTTCTGAAAGATCTGTAGCTCTAAATCCTGCTGCAGTGTGGGGTACAAGAGCTACAAATTGTCAGCCTCCTACTGGAGGTTTGTTATGTCCAAATGGACCACCCAAGGCAAAAGCTGATGCTGTCAGTGGCACACAAGCCTTTTCTTCAGCTGTTGCAGGTTCAAGCCAGAACTCGTCATTGCACAGTGATGCAACTAAGAGGCCACCGGCAAGTGACGGGAGTTATAATGACCGAGTACAAAATGATTCATTAAAACCTGTAAAGCAATTCAATAGCATGGAAAATCTGAGGAATGCAGGTGAGAAGACTGCTACATCTACTGATGGTTCTCTTGCACCTGTGAATTCAAACAGCCTGTCTTCTTTACCATTATCCAGAGATGGTGATAGAGGCAGTTGTACTACAAACACAACAAATTCTACTGACACCGCTGGGCAGTCATGCAGCTCTGGTCCTGAGGAAGCAACTATTGCTACCAATGAAGAGATGCAGAACTTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAATGAATACTATGGTGTGGTCAGATCTAATTGTCCCCCTTCTGATTATGTGTTGACAAAGTCTCCTCAACTTCAAGCATCGCAGCAGCATAAAGATGACAAATTTAGAGATGTACAAGTTTCAGTCGAATCTGGTAAAGCTGCTCCATCTGATTGGAAATTGAATTCACAAGCCCAAATAGTATCGGCTACAACTGACTTGGAAGATGATATAACTTCTTTTGATAATCAAAGGCTCAAAGATCCAGAAGTTGTTAGTCATTCTCATTACATGCCTAAGTCAACAAGTTTTGTTCCTTTCCCAATCCATTCTAACCATAGTCTCGTCCAACATAGGGAACAGGCCCCAGCTGTGAATGTTGATTTTGTATCTGCAGATTCTAAGGTTGGGGATGTTTCTCTGTTATATCCATCCAGCATATTATGTAATGGTTATCCTGACAAATTGGTCGGCAACTGCTCTTCTGGTTTGAATAGCACCACTGATTGTACATCACTTCAGGATGTAAGAAATGAACAATGCATTGGAAGATTATTCACCGAATCAGTTAGTGCTGGAAGTGATGCTGCATTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTATCCATGGACTTTGATGCATGGGATGACTCACTGACAACACCGCAGAATTTGGTTAAGTTGCTTGGTGACAACACTGATAACCAGTTTGTTGCCTTAAAAAAATCGAGTTCTTTGAAAGTGCAGAATAATAGTCAATCAAGATTCTCTTTTGCAAGACAGGATGAACCTAGAATGCAAGCATTTAATGAAAACCCATCTTATGGTATTAGTGAGCAATTTCCAGGGAGGGGCTCTTCCATGCATGATTTTTCTGAAAGAGACTTGTATAATGATAGGAAGTTGGGTATGGCAAATGGCTTTACTTACTGTAAAGTTGAGGAATCTGAAAATCTAGGCAGTGGTCACTTTGTTCCTTCTAGTAAGCATTCCGCTGTTTGTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAGTTCCAAGTAGGCCTCCACCACCAGGTTTTTCTTCTTATGAGAGAGTGGAACTGGCTTTCAGCTCAGTATCCGGGAATTCATTGCCTGACCCATCCTTGTTGAGAAATTCATATCAGACACCCACAGCTGGAAATATTGGTGGTACAGGGGACATTGAATTAGTAGATCCTGCAATTTTGGCTGTTGGCACGGGCAGACTTCAAGGTTCATTAAACAGCCCGGGGTTGGACATCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAATTATTGATGCAAAGGTCTCTCTCTCAGCCACAGAACAGATTTTCTGAAATTGGGAGTACTTTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGACCAATCACAAGTCAGCAATTTGACCCCTTTTGCTCAGTTGTCCTTACAGCAGTCTAGAAATGCTCTTTTGTCTAATGGCCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTAGTCTGGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGAATTAACAAGTTATATGCAGGATATGATGATTCAAAATATCGGATGCCAAGTTCTGGGGATCTTTACAACCGAACTTATGGGATTGTGGTCTTTAGCTGCAGCTGGTCTGGATTTACAGAAGTGAGCTGTAGTCGGATACAAATTGCCAATACCATTGTGATCGAAGTGCCAGATTTAACACATTTCGTGGATAGAAGTATATACAAATTTGATGGGACTGATTCAATGGCAAATATTTTGCATAGAGCCTAGCTAGTGGCGTCTGCTGAAGTGGATGAAGAAGAAAAGGAGAGAGGGAGGGGAAGTGAGTGGGTAGGTTTGGGCGGGAAGATGGCAGTGGATGAAATGGAGAATCCTGATGATGCTGCAGTAGAGAACTGTGGAACTGGGCTCCCACTTAGCAGGCCATGCCTTCGCCACGTCCAGTTGGGCTGTCCTGTGCTCATTCTCCCTGCTCTTTCCTGCCATATAGTTTCAACATTTCCCCCCTTCAATCTTCCACCACAAGAATGTCCCAGAAATATTTAA 3822 0.4176 MEISVESCIFLNAIAIFSFVLLITVSIECMCRTIIIKGQWALVSNLYFSYCHDCYSFSSPLTTIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVAMAANCERLVAEINTERKTKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEVKFFPSLHKQLNTVSSCGFFFYCFFMFLKSVVLFSSSIVQILQRREYFSQYGKLLKVSMSRTATGVVQQFPNNTCSVYITYSKEDEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNMVHNPDCLYLHEIGSQEDSFTKDEIISAYTRVQQITGATNNIQRRSGNVLPPPVDDYMNHSAGKPIVKNATNNSTSTARGSPPNGSSERSVALNPAAVWGTRATNCQPPTGGLLCPNGPPKAKADAVSGTQAFSSAVAGSSQNSSLHSDATKRPPASDGSYNDRVQNDSLKPVKQFNSMENLRNAGEKTATSTDGSLAPVNSNSLSSLPLSRDGDRGSCTTNTTNSTDTAGQSCSSGPEEATIATNEEMQNLCSNLSSVNIDRNGQNEYYGVVRSNCPPSDYVLTKSPQLQASQQHKDDKFRDVQVSVESGKAAPSDWKLNSQAQIVSATTDLEDDITSFDNQRLKDPEVVSHSHYMPKSTSFVPFPIHSNHSLVQHREQAPAVNVDFVSADSKVGDVSLLYPSSILCNGYPDKLVGNCSSGLNSTTDCTSLQDVRNEQCIGRLFTESVSAGSDAALDKGESSIISNILSMDFDAWDDSLTTPQNLVKLLGDNTDNQFVALKKSSSLKVQNNSQSRFSFARQDEPRMQAFNENPSYGISEQFPGRGSSMHDFSERDLYNDRKLGMANGFTYCKVEESENLGSGHFVPSSKHSAVCRAQISAPPGFSVPSRPPPPGFSSYERVELAFSSVSGNSLPDPSLLRNSYQTPTAGNIGGTGDIELVDPAILAVGTGRLQGSLNSPGLDIRSSFSPQLNYFENEARLQLLMQRSLSQPQNRFSEIGSTFSQIGDSYGISSRLDQSQVSNLTPFAQLSLQQSRNALLSNGQWDGWNEVQSGSSLGVAELLRNERLGINKLYAGYDDSKYRMPSSGDLYNRTYGIVVFSCSWSGFTEVSCSRIQIANTIVIEVPDLTHFVDRSIYKFDGTDSMANILHRAXLVASAEVDEEEKERGRGSEWVGLGGKMAVDEMENPDDAAVENCGTGLPLSRPCLRHVQLGCPVLILPALSCHIVSTFPPFNLPPQECPRNI 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0196 1273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 141 IPR013083 -
Lele29g0196 1273 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 65 1120 IPR039780 GO:0004842|GO:0030014
Lele29g0196 1273 MobiDBLite consensus disorder prediction 374 400 - -
Lele29g0196 1273 MobiDBLite consensus disorder prediction 437 460 - -
Lele29g0196 1273 CDD mRING-HC-C4C4_CNOT4 73 122 IPR039515 -
Lele29g0196 1273 Pfam RING/Ubox like zinc-binding domain 73 125 - -
Lele29g0196 1273 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 65 141 - -
Lele29g0196 1273 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 221 296 - -
Lele29g0196 1273 SUPERFAMILY RNA-binding domain, RBD 234 308 IPR035979 GO:0003676
Lele29g0196 1273 Gene3D - 223 296 IPR012677 -
Lele29g0196 1273 SUPERFAMILY RING/U-box 64 132 - -
Lele29g0196 1273 CDD RRM_CNOT4 169 308 IPR034261 -
Lele29g0196 1273 MobiDBLite consensus disorder prediction 469 555 - -
Lele29g0196 1273 MobiDBLite consensus disorder prediction 352 555 - -
Lele29g0196 1273 ProSiteProfiles Zinc finger RING-type profile. 73 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0196 Lele-ChrLele29 1133171 1143880 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1206 09 21005612 21020279 Lele29g0196 29 1133171 1143880 CCT
Lele29g0196 29 1133171 1143880 Lele31g1356 31 19435391 19441336 hybridization
Lele29g0196 29 1133171 1143880 Lele32g0186 32 1115839 1122093 hybridization