Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0183 ATGTACCCACACTCTAACGCTACATTCTCATGCGCCGCCAACTCCTTCGATCATTTTCCGTCACTATCCTATCCTTCAGTTACGTCAATGCATTCCATCTCCACTTCTCGCCAACACATCATTCCCGACCAGCTCACCGTCACTCACTTCGACTCGCTGCTCAACTCGGAGATGAGCCTTAATAATAGTTGCAGGAGTGGTTGTAGCAGCTACAGCTCGCCTAATTTGCTGGCGACCTATAGAACTAAACGGCCAAGCTTGATGCAGAGGAGAGTGAGCAGCCACTTGCTCCACAAGAATGAATATCGCAACCCTGTTTCTGCTCTGTTTGCCAAATTTCTCGACTCCGACGACGGTCCGGTACGCGGAGTTCACAGTACTGGCGATTTGAAGAGGAATCATGGGTCAGAGATGGCATTGTCAAGCGAAAGCAGTATGATCATAGAAGGGATGAGCAGAGCATGCCGTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGAAGCAAGCGAAATCTGAGAAACTTCAACAAGAAAATCAAGTATGCTTGCAGGAAGACATTAGCAGACAGCAGGCCACGCATCAGAGGAAGATTTGCGAGGAACGAAGAAACTGATAAGAGCCCTGCAGTTCAGTGGGTTGATTTCTTTGATAATTTAGTTGGTGCAGATAATATTGTTCAAGAGCCTCAAGATACTACTTTCTTTGGTCTCATGTTTTAG 729 0.4664 MYPHSNATFSCAANSFDHFPSLSYPSVTSMHSISTSRQHIIPDQLTVTHFDSLLNSEMSLNNSCRSGCSSYSSPNLLATYRTKRPSLMQRRVSSHLLHKNEYRNPVSALFAKFLDSDDGPVRGVHSTGDLKRNHGSEMALSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRNLRNFNKKIKYACRKTLADSRPRIRGRFARNEETDKSPAVQWVDFFDNLVGADNIVQEPQDTTFFGLMF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0183 242 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 208 IPR045281 GO:0009909
Lele29g0183 242 Pfam CCT motif 164 204 IPR010402 GO:0005515
Lele29g0183 242 ProSiteProfiles CCT domain profile. 162 204 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0183 Lele-ChrLele29 1039052 1041126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0183 158 209 C2C2-CO-like Transcription Factor Family AT5G15850 48.077 6.57e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele29g0183 CCT 1.7e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0183 29 1039052 1041126 Lele31g1369 31 19537276 19538382 hybridization
Lele29g0183 29 1039052 1041126 Lele32g0174 32 1004716 1006428 hybridization