Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0171 ATGGCTCCGGCGAAAGTTGATGTTATTCTTATTCTTTTTGATAGTTCGAAGAAAACTGATCCGAAGGCGCAGGCCTTGAAAGCTGCTAAAACAGTCAAGTCGGGCCCTGCCTTCAAAAAGAAGGCCAAGAAAATCAGAACCTCTGTTACATTCCATCGGCCAAAGACTTTGCAAAAGGCTAGGAATCCCAAATACCCACGTATTAGTGCTACACCAAGGAATAAACTCGATCATTATCAAATTTTGAAGTACCCTCTCACTACTGAGTCTGCAATGAAGAAGATTGAAGATAACAACACTTTGGTTTTCATTGTTGATCTACGTGCTAACAAGAAGAAGATAAAGGATGCGGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTAAATACCTTGATCAGGCCAGATGGCACCAAGAAGGCATATGTTAGGCTGACACCTGATTATGATGCATTGGACGTAGCAAACAAAATTGGGATTATCTAA 486 0.4074 MAPAKVDVILILFDSSKKTDPKAQALKAAKTVKSGPAFKKKAKKIRTSVTFHRPKTLQKARNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRANKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0171 161 Gene3D - 42 161 IPR012677 -
Lele29g0171 161 PANTHER 60S RIBOSOMAL PROTEIN L23A 17 161 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele29g0171 161 FunFam 60S ribosomal protein L23a 41 161 - -
Lele29g0171 161 Pfam Ribosomal protein L23 81 143 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele29g0171 161 Pfam Ribosomal protein L23, N-terminal domain 22 70 IPR005633 -
Lele29g0171 161 ProSitePatterns Ribosomal protein L23 signature. 139 154 IPR001014 GO:0019843
Lele29g0171 161 Hamap 50S ribosomal protein L23 [rplW]. 81 161 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele29g0171 161 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 78 154 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lele29g0171 161 TIGRFAM uL23_arch: ribosomal protein uL23 85 161 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0171 Lele-ChrLele29 938563 939854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0171 1 161 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 85.093 1.64e-69 205