Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0167 ATGGTTCGGCAAGATATGCGAAAAGGTACATGGACGGAACAGGAGGACATAAAACTGGTGTCGTTTGTGGGCTTATTTGGAGACCGAAGATGGGATTTTATTGCAAAGGTTTCAGGTTTGCATAGGACAGGTAAAAGTTGCCGGTTACGTTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGCAAGATGACACCCCAAGAAGAACGTCTCGTCCTCGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAAAATTGCTCGCAAATTGCCAGGACGCACGGATAATGAGATTAAGAATTACTGGAGGACTCACATGAGGAAGATGGCCCAAGAGAAGAAGCGAGCAGCGGCAGCTTCTTCATCATCATCAGCATCCTCCAACAACAGTAGTTCTGGAGATCAAGAAGAAAGCTTTTATGATAAAGGAGGTCCTAATAACATGATGATATGTTCTTCCAGAGAGATAAAGATCACAGGGGAAGATCAAGCGTGTGAAGAAGAAGAAGGGTACTCCATGGACGATATATGGAAAGATATAGAAGTGTCGGAAGAGAATATCAGTGAAGAGTACAACTTTTCTTGTCCTTCATGGGAATACTCTAGTTCAGAATCGCTATGGGTTATGGACGAAGGGGAAAGTCAGATTTTTAACCCATTTTTTCCCCAAGGGGCGCCACTTCTCTAA 687 0.4381 MVRQDMRKGTWTEQEDIKLVSFVGLFGDRRWDFIAKVSGLHRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKMAQEKKRAAAASSSSSASSNNSSSGDQEESFYDKGGPNNMMICSSREIKITGEDQACEEEEGYSMDDIWKDIEVSEENISEEYNFSCPSWEYSSSESLWVMDEGESQIFNPFFPQGAPLL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0167 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Lele29g0167 228 CDD SANT 10 55 IPR001005 -
Lele29g0167 228 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lele29g0167 228 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 123 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele29g0167 228 MobiDBLite consensus disorder prediction 116 137 - -
Lele29g0167 228 Gene3D - 63 137 - -
Lele29g0167 228 CDD SANT 63 106 IPR001005 -
Lele29g0167 228 FunFam MYB transcription factor 63 130 - -
Lele29g0167 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Lele29g0167 228 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Lele29g0167 228 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Lele29g0167 228 SMART sant 7 57 IPR001005 -
Lele29g0167 228 SMART sant 60 108 IPR001005 -
Lele29g0167 228 FunFam Myb transcription factor 8 60 - -
Lele29g0167 228 Gene3D - 8 60 - -
Lele29g0167 228 MobiDBLite consensus disorder prediction 112 146 - -
Lele29g0167 228 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Lele29g0167 228 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0167 Lele-ChrLele29 916881 917805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0167 1 216 MYB Transcription Factor Family AT5G59780 61.039 1.16e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele29g0167 Myb_DNA-binding 9.7e-14 CL0123