Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0160 ATGTCTGCGGCTCTGGATATGACCCTTGATGACATCATCAAGAAAAACAAGAAATCTGGATCTGGTAACACCAGAGGTCGTGGCCGAGGATCTGGTCCCGGTCCTGCTCGCCGCTTACCAAATCGTGCCGCCAATCGTGCAGCACCTTATACAACTGCAAAGGCACCGGAGGCGACATGGCAGCATGATATGTTTGCGGATCAGCCGATGGCACCGTACGCAGCTCAAGTTAGTCGAGCGTCTGCCATAGAAACGGGCACTAAACTCTACATATCTAATTTGGATTACGGTGTTTCTAACGAGGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACCTAAAACGGTATGCTGTCCATTACGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTCTTTTCACGTCGAGTTGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTTGATGGTAAACCAATGAAGATAGAGATTGTGGGGACAAACATTGCTACACCTGCTGCGGCTCCTGCTGCAAATGGAGCTGTTGGAAATTTAAACGGTGTTCCTAGAATTGGACAAGGTAGAGGTGGGGCTTTTGGAAGGCCACGTGGTGGTGGTGGTGGTGGAGGTAGAGGACGTGGCTTTCAGAGGGGTCGAGGACGTGGAAGAGGTCGTGGAGAGAAGGTGTCTGCAGAAGATCTTGATGCTGAATTGGAGAAGTATCATTCAGAGGCAATGGAAATAAACTGA 741 0.4872 MSAALDMTLDDIIKKNKKSGSGNTRGRGRGSGPGPARRLPNRAANRAAPYTTAKAPEATWQHDMFADQPMAPYAAQVSRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYAVHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAAPAANGAVGNLNGVPRIGQGRGGAFGRPRGGGGGGGRGRGFQRGRGRGRGRGEKVSAEDLDAELEKYHSEAMEIN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0160 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Lele29g0160 246 Pfam C-terminal duplication domain of Friend of PRMT1 187 240 IPR025715 -
Lele29g0160 246 FunFam THO complex subunit 4 80 230 - -
Lele29g0160 246 SMART FoP_duplication_2 178 246 IPR025715 -
Lele29g0160 246 Gene3D - 70 229 IPR012677 -
Lele29g0160 246 MobiDBLite consensus disorder prediction 14 53 - -
Lele29g0160 246 MobiDBLite consensus disorder prediction 217 246 - -
Lele29g0160 246 SUPERFAMILY RNA-binding domain, RBD 59 193 IPR035979 GO:0003676
Lele29g0160 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Lele29g0160 246 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 244 - -
Lele29g0160 246 CDD RRM_THOC4 87 161 - -
Lele29g0160 246 SMART rrm1_1 88 160 IPR000504 GO:0003723
Lele29g0160 246 MobiDBLite consensus disorder prediction 190 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0160 Lele-ChrLele29 883406 885278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0160 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 3.75e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0160 29 883406 885278 Lele31g1393 31 19678266 19680214 hybridization
Lele29g0160 29 883406 885278 Lele32g0148 32 854742 856675 hybridization