Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0145 ATGCTGGAAGCTGCCATGGAGGAAGACAAAGCAGCTATGGTGCAGAGTTCGTTTGACTCGATAAATGAGATAGCTGCGATCTCGGACTACAGGAGCATAGTCAAGAAGCAGTACTGCAATTTGGCAAGAAGGTTGAAGTTGTTGATTCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGGCGCCGCCTGAAGAGACCTTGAAAGCTTTGATTTCCTTCAAGGGATCTTTAGAATCAGCCAAACAACTTCTCAGATTCGGGAGCGATGGCAGCAAGATTTATATGGTCTTAGAGAGGGAGCAAATTATGAAACAATACCACGAGGTGACAGCTCAATTAGAACAAGCTTTGAGTGGAATTTCATATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGGCACAATTCAGAAGAGCCAAAGGAATGGATGATGCACTTGATGATGAGTTGTACGATGATATCTTGTCACTTTATGATAAGAGCAGTGACGCAGCAACAGATCCAGCTGTTCTAAGGAGATTAGCTGAAAAATTGCAGTTGATGGGAATATCTGATCTTACACAAGAGTCACTAGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGGGATCCGGGAGCAAGTATCGAGAAGATGTCAATGTTATTGAAAAAAATAAAGGATTACGTACAAACAGAGAATCTAGTCATGGATGATACTGAAGGTGGAAAAGGCCTTTCTTTGTGCAGTAGCAGCTATGGGATGAGTGAAAAGGGTCATCAAGCCCCTATTGTCCCCAACGATTTTCGGTGTCCAATTTCCCTGGAATTGATGAAAGATCCTGTTATTGTTTCCACAGGACAGACATATGAGCGTTCTTGTATTGAGAAGTGGTTGGAATCAGGGCATGTCACCTGTCCAAAAACACAGCAGACACTTACTAGCACCGTTCTCACACCCAATTATGTCTTACGAAGCCTCATAGCACAGTGGTGTGAAGCCAATGGAATGGAACCTCCAAAACGACCCAGCAGTTCCCTGCCTAGTAAGTCAGCATCTACCTGCTCACCAGCTGAGCGTAGTAAGATTGAAAACCTTCTCTGTAAGCTTACATCTGGAAATCCTGAAGACCAGAGATCAGCAGCAGGTGAGATCCGTCTTTTAGCAAAACGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCATTCCTTGTTGACCTCCTCGCTATACCTGACTCCCGAACTCAAGAGCATGCCGTAACAGCTCTTTTAAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGCATAGTTCATGTGCTCAGGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCCACACTTTTCAGCCTCTCCGTCGTAGATGAAAATAAGGTTACTATCGGGTGCTCAGGAGCCATCCCACCACTAGTTACACTGCTAAGCGAGGGTACCCAAAGGGGTAAAAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATATACCAGGGTAACAAGGGAAAAGCAGTGAGGGCTGGTGTTGTTCCTACACTGATGCGACTGCTAACAGAACCTGGTGGGGGAATGGTTGATGAAGCATTGGCCATATTGGCAATATTGGCTAGTCATCCAGAAGGGAAGGTTGCAATTGGTGCTGTGGAGGCTGTACCAGTTTTGGTAGGGGTCATTGGGAATGGATCCCCAAGAAACAAAGAGAATGCGGCCGCCATTTTAGTACACCTTTGTTCCGGAGATCAGCAATATCTAGCGCAAGCCAAAGATCTCGGTGTGATGGGTCCATTGGTGGATCTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTGCTGGAGCGAATGAACAGATTCGTTGAGCAGCAGCAGCAGCAGGAAGTTCAAACACAGACTGAAGTGCAAGTTCAGAATCAGGATATACGGCCCCCTTCTATTTACTAA 1998 0.4555 MLEAAMEEDKAAMVQSSFDSINEIAAISDYRSIVKKQYCNLARRLKLLIPMFEEIRDSKEAPPEETLKALISFKGSLESAKQLLRFGSDGSKIYMVLEREQIMKQYHEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGMDDALDDELYDDILSLYDKSSDAATDPAVLRRLAEKLQLMGISDLTQESLALHEMVAASGGDPGASIEKMSMLLKKIKDYVQTENLVMDDTEGGKGLSLCSSSYGMSEKGHQAPIVPNDFRCPISLELMKDPVIVSTGQTYERSCIEKWLESGHVTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGMEPPKRPSSSLPSKSASTCSPAERSKIENLLCKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPFLVDLLAIPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDENKVTIGCSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKVAIGAVEAVPVLVGVIGNGSPRNKENAAAILVHLCSGDQQYLAQAKDLGVMGPLVDLAQNGTDRGKRKAAQLLERMNRFVEQQQQQEVQTQTEVQVQNQDIRPPSIY 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0145 665 FunFam RING-type E3 ubiquitin transferase 10 123 - -
Lele29g0145 665 Gene3D - 10 123 IPR036537 GO:0007166
Lele29g0145 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Lele29g0145 665 SMART arm_5 554 594 IPR000225 GO:0005515
Lele29g0145 665 SMART arm_5 596 636 IPR000225 GO:0005515
Lele29g0145 665 SMART arm_5 390 430 IPR000225 GO:0005515
Lele29g0145 665 SMART arm_5 431 471 IPR000225 GO:0005515
Lele29g0145 665 SMART arm_5 472 512 IPR000225 GO:0005515
Lele29g0145 665 SMART arm_5 513 553 IPR000225 GO:0005515
Lele29g0145 665 MobiDBLite consensus disorder prediction 336 356 - -
Lele29g0145 665 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Lele29g0145 665 SUPERFAMILY RING/U-box 263 339 - -
Lele29g0145 665 CDD RING-Ubox_PUB 267 309 IPR045210 -
Lele29g0145 665 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Lele29g0145 665 FunFam RING-type E3 ubiquitin transferase 346 497 - -
Lele29g0145 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 561 IPR000225 GO:0005515
Lele29g0145 665 FunFam RING-type E3 ubiquitin transferase 537 655 - -
Lele29g0145 665 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Lele29g0145 665 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Lele29g0145 665 PANTHER U BOX DOMAIN-CONTAINING 35 637 - -
Lele29g0145 665 Gene3D - 347 661 IPR011989 -
Lele29g0145 665 MobiDBLite consensus disorder prediction 340 356 - -
Lele29g0145 665 SUPERFAMILY ARM repeat 361 641 IPR016024 -
Lele29g0145 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Lele29g0145 665 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Lele29g0145 665 FunFam RING-type E3 ubiquitin transferase 262 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0145 Lele-ChrLele29 797667 801327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0145 6 646 U-box Gene Family AT3G46510 70.451 0.0 916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0145 29 797667 801327 Lele31g1407 31 19761594 19765242 hybridization
Lele29g0145 29 797667 801327 Lele32g0135 32 766955 770891 hybridization