Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0139 ATGAGAAATATTGCCCTTCTGGACAGTCGTGCACAGGAAGCAAACCGCAGGCATGATGAAGCTGCAGATGAGTTATTATTAATTCAAGCATCCATATCAACCCTGTGGCATGAAAAGCAGCAGATCGGGAGACAAAAGATGGAAGCCCTCCGCTGGCTTGAGCGATGGAAAAGTCGGGGACATTTTGGAGCTGCACATTGCCATGGGGTCATAGGATTTGCTGAAGAATTACCTGAGTTAGCAGAATTTTCACTTTCAGATCTTCAAAATGCTACGTGCAATTTTTCTGAGAGCTTCAAAATTGCACAGGGAGGATATGGTTGCATTTACAAGGGGGAAATGCCGGGTAGAACAGTTGCTATTAGGAAGTTCCATCCACATAACATGCAAGGACCGGCTGAGTTTCATCAAGAGGTTCAAGTTCTTGATAGCCTCCAGCATCCTCATCTATTGACTTTGCTTGCTGTTTGCCCTGAAGCCTGGTCACTAGTGTACGAGTACTTACGCAATGGGAGTCTTCAAGACCTCCTATTCCGGGAAAACAGCAATTCCCCTCTGACATGGAATAGCCGAGCACGTATGATTGCTGAAATTGCTAGCGCTCTTTGCTTTTTACACACTTCCAAACCCAAAACTATTGTACAATGTGACAGAAAGCCTGAAACGATACTTCTTGATTCAGCACTTAGTTGCAAGATATGTGAATTTGGGTTCTGCAGACTGTTGACAGAGAAGTCACTCTATCGTCCTAGTTTCAGATTCAGCGCTGAGCTAAAACGCACTTCTACATATCCAGATCCAGAGTTTGAGAGGACTCGAAAACTAACACCGAAGTCTGATATCTATTCGTTTGGACTCATCATTTTGCAACTCCTGTCTGGCATGACTATTCCAGTTGGATTCCTTTTTCAGGAAATAATGCATGATCCCCAGGTTGTAGCAGGCGGATTCACTTACGAAGGGGAAGCCATACGTGAAGGCCTGGAAAATGGTCACGAGACTTCTCCCATGACTAATTTAAAATTGAGTCACCTGCATCTGACGCCCAATCATGCTCTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 1095 0.4475 MRNIALLDSRAQEANRRHDEAADELLLIQASISTLWHEKQQIGRQKMEALRWLERWKSRGHFGAAHCHGVIGFAEELPELAEFSLSDLQNATCNFSESFKIAQGGYGCIYKGEMPGRTVAIRKFHPHNMQGPAEFHQEVQVLDSLQHPHLLTLLAVCPEAWSLVYEYLRNGSLQDLLFRENSNSPLTWNSRARMIAEIASALCFLHTSKPKTIVQCDRKPETILLDSALSCKICEFGFCRLLTEKSLYRPSFRFSAELKRTSTYPDPEFERTRKLTPKSDIYSFGLIILQLLSGMTIPVGFLFQEIMHDPQVVAGGFTYEGEAIREGLENGHETSPMTNLKLSHLHLTPNHALRLAIQDWLCKS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0139 364 SUPERFAMILY RING/U-box 302 363 - -
Lele29g0139 364 ProSiteProfiles Protein kinase domain profile. 95 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0139 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 364 IPR013083 -
Lele29g0139 364 ProSiteProfiles U-box domain profile. 304 364 IPR003613 GO:0004842|GO:0016567
Lele29g0139 364 SMART Ubox_2 302 360 IPR003613 GO:0004842|GO:0016567
Lele29g0139 364 Pfam Protein kinase domain 98 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0139 364 Pfam U-box domain 302 363 IPR003613 GO:0004842|GO:0016567
Lele29g0139 364 PANTHER OS02G0152300 PROTEIN 304 358 - -
Lele29g0139 364 Coils Coil 4 24 - -
Lele29g0139 364 SUPERFAMILY Protein kinase-like (PK-like) 77 307 IPR011009 -
Lele29g0139 364 Gene3D Transferase(Phosphotransferase) domain 1 73 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0139 Lele-ChrLele29 765518 766986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0139 302 361 U-box Gene Family AT2G45910 66.667 8.19e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele29g0139 Pkinase 2.6e-27 CL0016