LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g0137	ATGTTAGGAGATCTGGACTCCCTTCCAGAGGAAGATAAGCTCAGAATGGCCGCCATGATTGATCAGCTCCGAATTCGAGACAGTCTAAGAATGTACAACTCACTGGTGGAGAGATGCTTTAACGATTGTGTTGACACCTTCAAGCACAAATCTCTGCAAAAACAAGAGGGAAGCTGCGTGCGAAGATGTGCAGACAAGTTTTTGAAGCACTCCTTGCGTGTTGGCATGAAGCTATCATTTGTGATTGAGATCTTTCATGCTGGGAATTCTTTCCCTCTGTCGAGACCAATCATCCCATCATATGAAGGTTTGAGCTTTGGACATTTTACGCGATATGGTGGGGTCCCTTTAAATCCAACCAAAGGAGGTCCCTTCGAAGGCGACACCCTTACCCCACACCTCACCTTCGTTGTTCGTCTCCTTCCAAAGTCTGTGCCACAGCGTATTATTAGCTCCACAACAAGCGTTCGTATAAACCCCTTACCTCCTCCTCTTTCTTCTCTCCTTTATCCTTCCCATGAGTCTGGTCTCTTCCTTCAAACCCACTTCAAACAGTTTATTTCTGTCATGGGAAGTTGTTTGGGCACCCAGATTAAAGCTGAGAGCCAGTGTAACACAGGGTTGGATTCAAAACACGTGAACACAGATGGGAGTGATCTGAGCAGCATGGGTAGCGAGGTCTCAAAGGCCTCGGCAACTCGTTCTCGCCGGAGTGAGGGTGAGATCTTGCAGTTATCCAATTTGAAGAGTTTTACTTATGCAGAATTGAAGGCGGCCACACGAAATTTCGGACCAGATAGAGTTTTAGGAGAAGGTGGTTTTGGGTCAGTCTTCAAAGGGTGGATTGATGAGAGGTCCCTAACTGCTACCAAGCCTGGCACTGGCATTATTATTGCGGTGAAAAGGCTTAAGAAAGGTAGCATGCAAGGTCACAATGAATGGTTGGCTGAAGTGAATTTTCTAGGACAATTTTCTCATCCCCATCTCGTAAAGTTGATCGGGTATTGCCTTGAAGACGAACACCGCCTTCTGGTGTATGAATTTATGCCTCGAGGTAGCCTGGAGAATCATTTATTCAGGAGGGGCTCTTATTTCCAACCTCTCTCATGGAGCCTCCGTTTGAAGATCGCCCTTGGTGCCGCCAGAGGGCTCGCATTTCTTCACAGTGCCGAGACAAAAGTGATATACAGAGACTTCAAGACCTCAAATATCTTGCTCGATTCAGATTACAATCCAAAACTTTCTGATTTTGGGTTGGCGAAGGATGGACCAGCAGAGGACAAAAGTCATGTGTCCACCAGAGTACTAGGAACCTATGGATATGCAGCGCCAGAATATATAGCCACCGGTCACCTGACTACAAAGAGTGATGTTTATAGTTTCGGAGTAGTGCTGGTGGAAATGTTATCAGGTAGGCGAGCAATGGACAAGAATAGACCATCAGGACAACGCAACTTGGTGGAGTGGGCTAAGCCATACCTTGCAAACCAACGTAAGCTGTTTCGTGTGCTGGATACGCGTTTTGAAGGTCAATATACAATAGAAGAGGCCTACAAGACAGCTACGCTGGCATTGCGATGCATTTCTATTGAATCCAAGCTGAGGCCAAGCATGAAGGAGGTTGTTTCTGCATTGGAGCAGCTTCAAGTTCCCAATGTAAATGGAGGCAAACAGAAGCCCTCTGTGGATGGTTCCAGTCGCAGAAAAAGTGAAGGTGACGCCAAGTGTGGGAGGACCACCATAGCTTATCCCCGTCCATCTGCTTCCCCTCTCTATGCTCGAAACTTCATAGGGTGA	1797	0.4691	MLGDLDSLPEEDKLRMAAMIDQLRIRDSLRMYNSLVERCFNDCVDTFKHKSLQKQEGSCVRRCADKFLKHSLRVGMKLSFVIEIFHAGNSFPLSRPIIPSYEGLSFGHFTRYGGVPLNPTKGGPFEGDTLTPHLTFVVRLLPKSVPQRIISSTTSVRINPLPPPLSSLLYPSHESGLFLQTHFKQFISVMGSCLGTQIKAESQCNTGLDSKHVNTDGSDLSSMGSEVSKASATRSRRSEGEILQLSNLKSFTYAELKAATRNFGPDRVLGEGGFGSVFKGWIDERSLTATKPGTGIIIAVKRLKKGSMQGHNEWLAEVNFLGQFSHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKIALGAARGLAFLHSAETKVIYRDFKTSNILLDSDYNPKLSDFGLAKDGPAEDKSHVSTRVLGTYGYAAPEYIATGHLTTKSDVYSFGVVLVEMLSGRRAMDKNRPSGQRNLVEWAKPYLANQRKLFRVLDTRFEGQYTIEEAYKTATLALRCISIESKLRPSMKEVVSALEQLQVPNVNGGKQKPSVDGSSRRKSEGDAKCGRTTIAYPRPSASPLYARNFIG	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g0137	598	Gene3D	Phosphorylase Kinase; domain 1	238	348	-	-
	Lele29g0137	598	ProSitePatterns	Protein kinases ATP-binding region signature.	269	301	IPR017441	GO:0005524
	Lele29g0137	598	Gene3D	Mitochondrial import inner membrane translocase subunit tim13 like domains	3	81	IPR035427	-
	Lele29g0137	598	FunFam	Serine/threonine-protein kinase BIK1	230	348	-	-
	Lele29g0137	598	CDD	STKc_IRAK	269	548	-	-
	Lele29g0137	598	Pfam	Tim10/DDP family zinc finger	21	78	IPR004217	-
	Lele29g0137	598	FunFam	Probable serine/threonine-protein kinase PBL8	349	563	-	-
	Lele29g0137	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	394	406	IPR008271	GO:0004672\|GO:0006468
	Lele29g0137	598	MobiDBLite	consensus disorder prediction	552	582	-	-
	Lele29g0137	598	Pfam	Protein tyrosine and serine/threonine kinase	267	545	IPR001245	GO:0004672\|GO:0006468
	Lele29g0137	598	ProSiteProfiles	Protein kinase domain profile.	263	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele29g0137	598	Gene3D	Transferase(Phosphotransferase) domain 1	349	562	-	-
	Lele29g0137	598	PANTHER	OS01G0588500 PROTEIN-RELATED	228	549	-	-
	Lele29g0137	598	SUPERFAMILY	Tim10-like	26	78	IPR035427	-
	Lele29g0137	598	SUPERFAMILY	Protein kinase-like (PK-like)	239	545	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g0137	Lele-ChrLele29	752499	758059	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g0137	233	545	Glycoside Hydrolase	AT3G07070	47.452	5.49e-97	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele29g0137		PK_Tyr_Ser-Thr	8.1e-46	CL0016