Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0123 ATGAGTTTCGTCTTCCGAGGAAGCAGAGATATGGAAAGTGGATTTTCAGAATATGTTCCCGAAAGAACCACGATGCGTGTCCATCAGGCCCGGCCAGTAAATAGCAATACTCTAGCTTTTCTCATTACAGTTATCTTGCTGTTTATGATATTGAACTCTCCCCAAATGTCACATTTTTTGATGTGGCTTATGCTGGTTGTATTTGTGATGGCCACAAGCCTGAGGATGTATGTAACTTGGCAACAGCTTCAAGCTCAAGCGAGTGCTCATGCCGAAGTAGCTGAATTACAACTTCACGTACCACCATCGATAGCAATTGCAACTAGAGGACGCTTGCAAGGACTCAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATAATGAAACGTTGAGGGCTCTGGAATCTGACACTGCTTCTACTACCACTTCAATGACTGATGAAGAGATAAATGCTTTACCTGTTCACACATATAAAGTTCCTGTCCCAACAAAGGATTGCTCAGCTGGGTCAGCATCCTCTTCACGAGCAACTGAGGTTAAGCAAGATAATGGAGGGACAGAGGGAAATTTGAAGGGTGCAGAAGATGATCTAACATGTACTATATGTTTGGAACACGTAAAGAGAGGGGAGCTAGTCCGTAGCTTGCCATGTTTGCATCAGTTTCATATGAGCTGCATCGATCCATGGCTGCGACAGCAAGCAAAATGCCCAGTGTGTAAATTTATGATGGGATCTGAAGGTTTAGATATCGTGTAG 768 0.4375 MSFVFRGSRDMESGFSEYVPERTTMRVHQARPVNSNTLAFLITVILLFMILNSPQMSHFLMWLMLVVFVMATSLRMYVTWQQLQAQASAHAEVAELQLHVPPSIAIATRGRLQGLRLQLALLDREFDELDNETLRALESDTASTTTSMTDEEINALPVHTYKVPVPTKDCSAGSASSSRATEVKQDNGGTEGNLKGAEDDLTCTICLEHVKRGELVRSLPCLHQFHMSCIDPWLRQQAKCPVCKFMMGSEGLDIV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0123 255 MobiDBLite consensus disorder prediction 169 194 - -
Lele29g0123 255 CDD RING-H2_PA-TM-RING 202 244 - -
Lele29g0123 255 MobiDBLite consensus disorder prediction 170 188 - -
Lele29g0123 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 250 IPR013083 -
Lele29g0123 255 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Lele29g0123 255 Pfam Ring finger domain 202 244 IPR001841 -
Lele29g0123 255 SMART ring_2 203 243 IPR001841 -
Lele29g0123 255 PANTHER TARGET OF ERK KINASE MPK-1 1 250 - -
Lele29g0123 255 Coils Coil 112 132 - -
Lele29g0123 255 SUPERFAMILY RING/U-box 198 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0123 Lele-ChrLele29 695710 698072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0123 1 245 C3H Transcription Factor Family AT3G55530 65.098 2.47e-108 312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0123 29 695710 698072 Lele31g1429 31 19869424 19871611 hybridization
Lele29g0123 29 695710 698072 Lele32g0117 32 665731 668089 hybridization