Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0121 ATGAACGGTTTCGGGTGTTCCGAGAACCCACCCGCTTCAAAAGCAGCCATAGAGTCGATGCCCACTGTTGTTATTGAGGAGACTCATGTCGGTTCTGATGCCCACTGTGCCGTGTGCAAGGAGGCGTTCGAACTCGGTACGGAGGCCCGTGAAATGCCTTGTAAGCACGTATACCACTCAGAATGCATCCTCCCGTGGCTTTCGTTGCGCAATTCATGCCCCGTGTGCCGCCACGAGCTGCCGTCAGATCGAAACACGGTAGACAATAGAATGTCGGGGCAAATCGATGACGAAACAGTAGGATTGACGATTTGGAGGATGCCTGGTGGAGGATTCGCGGTTGGAAGGTTTTCTGGTGGTCGCAGAGCTGGTGAGAGTCATTTCCCCGTTGTGTACACAGAAATGGACGGTGGAAGCAATACGAACGGAGTCCCGAGAGCAGTTTCCCGAGCAGCGAGAAGCCCCAGAGTTAGAGAAAGTCGTGGCTTAGGCAGACTTGTTCGGAATTTCTTGTCATTCTTTGGAAGGCGTCGGACAAGGTCAGCATCATCTTCATCTGCTGGTTCGGCGCGCGAGACCATGAGTATGAGTCGTAGCCATTTGATCTCATTATTCGGTAGGAACTCAAGGAGGCGCAGCAGAACTTGGGTTTTGGAAGATTGA 663 0.5264 MNGFGCSENPPASKAAIESMPTVVIEETHVGSDAHCAVCKEAFELGTEAREMPCKHVYHSECILPWLSLRNSCPVCRHELPSDRNTVDNRMSGQIDDETVGLTIWRMPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGSNTNGVPRAVSRAARSPRVRESRGLGRLVRNFLSFFGRRRTRSASSSSAGSARETMSMSRSHLISLFGRNSRRRSRTWVLED 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0121 220 SUPERFAMILY RING/U-box 16 88 - -
Lele29g0121 220 Pfam Ring finger domain 35 77 IPR001841 -
Lele29g0121 220 CDD RING-H2_RNF126_like 36 77 - -
Lele29g0121 220 Pfam Protein of unknown function (DUF1117) 100 210 IPR010543 -
Lele29g0121 220 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Lele29g0121 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 83 IPR013083 -
Lele29g0121 220 SMART ring_2 36 76 IPR001841 -
Lele29g0121 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 81 - -
Lele29g0121 220 FunFam E3 ubiquitin-protein ligase RING1-like 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0121 Lele-ChrLele29 691746 692408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0121 10 83 C3H Transcription Factor Family AT5G01980 54.054 1.92e-25 101