Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0110 ATGGAGTCTGAAGATCAGACAACATCATCAGAAACAAAGGCAAACGATGAGCAAGGAGCGAGTCAAGTGACAAGGTCGTACGAGTGCAGCTTCTGTAAAAGGGGATTCTCTAATGCACAAGCACTGGGAGGCCACATGAACATTCACAGGAAAGACAAAGCCAAGATCAAGCAATCTTCTTCCAATTCAACCCATCGTCATCGCCATCGTCATCAACCATCTTTGGATGTTCACCGTAAGGTCGAAGACAGAACCAGCTCAGCTTACTGGCCTAGCAGCAGGAATATGGAAGATTCGTCTTCCAGAGACGAAACCTGCGAAGAACTTGGCATAAAGCAGCTTCCTTTATTTGCAGAAACACCAAGTGGCGAAGAATTAGGTCGTGTTCATGATAGAAGAGGAATTTCTGAAGAGATGAAGAGTTCGCCTTCGGATTTAGACCTTGAACTCAGACTAGGGCCTGACCCACCCTCTCCCACTATTGGTACCCGGAAATTCTTTTGA 504 0.4623 MESEDQTTSSETKANDEQGASQVTRSYECSFCKRGFSNAQALGGHMNIHRKDKAKIKQSSSNSTHRHRHRHQPSLDVHRKVEDRTSSAYWPSSRNMEDSSSRDETCEELGIKQLPLFAETPSGEELGRVHDRRGISEEMKSSPSDLDLELRLGPDPPSPTIGTRKFF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0110 167 MobiDBLite consensus disorder prediction 40 167 - -
Lele29g0110 167 MobiDBLite consensus disorder prediction 1 24 - -
Lele29g0110 167 Gene3D Classic Zinc Finger 3 88 - -
Lele29g0110 167 MobiDBLite consensus disorder prediction 60 74 - -
Lele29g0110 167 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lele29g0110 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Lele29g0110 167 PANTHER OS07G0101800 PROTEIN 1 156 - -
Lele29g0110 167 SUPERFAMILY beta-beta-alpha zinc fingers 25 54 IPR036236 -
Lele29g0110 167 SMART c2h2final6 27 49 IPR013087 -
Lele29g0110 167 Pfam C2H2-type zinc finger 27 51 - -
Lele29g0110 167 MobiDBLite consensus disorder prediction 124 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0110 Lele-ChrLele29 656693 657196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0110 24 163 C2H2 Transcription Factor Family AT3G53820 36.842 3.01e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0110 zf-C2H2_6 7.6e-06 CL0361