Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0092 ATGAGGAAACCTGAGTCTGGGAAAAACAACAACAATAACAAGCTTAGGAAGGGGCTGTGGTCACCGGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTCGCCAGGAATGCCGGCTTGCAAAGATGTGGCAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCCGATCTTAAGCGCGGTGCTTTCTCTCCCCAGGAAGAAGAACTTATCATCCATCTTCACTCCCTTCTCGGCAACAGATGGTCCCAAATAGCGGCACGTTTGCCCGGGCGAACCGACAACGAAATCAAGAATTTCTGGAACTCCACAATAAAGAAAAGGCTCAAGCTCATGTCATCCCCCACCACCCACACCACCTCACAAAATGCAAGCGACTCGTCTTCCTTATTGTCTGAGCCTAATATTAAAGACCTCAACAACGTCATGGGAGGTTTCATGCCTATGTTCAACAACAACATAATTGAGAGATTGCCCATGCTTGAGCATGGACTACACGCTCAAGCAGCTTCTGACGGGTTCTTCAACGCTAATAATGGAGGACCTTGCTTCACACAAAATGGGGTTGACCACAACAACATCATTAATAATGGTTTTCATGTAGAAAATGGAGAGTTTGGGATTGGGAGTGTAAATATTGGAGCACAAGTAGGGGAGCTGTTTGTGCCTCCTCTAGAGAGTGTTAACACCATAACTGATAACCTGCAGAAACTGGATAATAGAGACACTAACGTTAACAGTTACTTTGACAACATAAACAGCATCGTTAATAACTGCAGCAACAATAAGAATAGAGGTGGGATCGTGGAGAATCTGTTTCAGGAAGAGCTAACTTTGGGAGAGTGGGACTTAGAGGACTTCATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTAA 930 0.4441 MRKPESGKNNNNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKLMSSPTTHTTSQNASDSSSLLSEPNIKDLNNVMGGFMPMFNNNIIERLPMLEHGLHAQAASDGFFNANNGGPCFTQNGVDHNNIINNGFHVENGEFGIGSVNIGAQVGELFVPPLESVNTITDNLQKLDNRDTNVNSYFDNINSIVNNCSNNKNRGGIVENLFQEELTLGEWDLEDFMKDVSSFPFLDF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0092 309 Gene3D - 71 141 - -
Lele29g0092 309 Gene3D - 14 70 - -
Lele29g0092 309 PANTHER MYB DOMAIN PROTEIN 55 10 151 - -
Lele29g0092 309 MobiDBLite consensus disorder prediction 122 142 - -
Lele29g0092 309 FunFam Transcription factor MYB46 71 145 - -
Lele29g0092 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lele29g0092 309 SMART sant 69 117 IPR001005 -
Lele29g0092 309 SMART sant 16 66 IPR001005 -
Lele29g0092 309 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele29g0092 309 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Lele29g0092 309 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele29g0092 309 CDD SANT 20 64 IPR001005 -
Lele29g0092 309 FunFam MYB transcription factor 14 70 - -
Lele29g0092 309 CDD SANT 72 112 IPR001005 -
Lele29g0092 309 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele29g0092 309 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Lele29g0092 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0092 Lele-ChrLele29 541426 543358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0092 1 306 MYB Transcription Factor Family AT5G12870 48.889 1.52e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele29g0092 Myb_DNA-binding 3.5e-12 CL0123