Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0087 ATGGACCATCGAACGGATATGGATTCATTTCGTACACATTGTTGCCGTTGTCCACCGCCATGCGAGCTTCCTCATTGTAATAACCCATTGGTGATAGGCCTAATAAGGTACTCCTATGGTTTCTGTATTCTAGTTCGTTTCTTTGGAAAGTGCACAGCACTGAATAGCGAAATCTCGATCGATGAGGCACACATATTGCAGAAAATATGCAGTCTTGAATGTCTCAATGAGCAATTGTCTGAGAAAGAATTCAAAATGAGTTGGAACACAAACATGGAGGTCCACTACAACAATATCAGCTACCCCTACAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTAACCTACGAACACGTCAATTTCATTTTTGCTGGTGCTTCTCATGCTCAGGAGAGCTTGTACCCATCAACTACAAGTTTATACAAGTTTGGCCTATCTGAGCCTGAGAATACTTCATACTATCGTTACAGTGATGGTTATGAGGTGAATAATCATGACCCTTGGATGGATGAGCACAGAAGGCCTTTAGAGAACCCAGCAATATTTAGTGAACATACTGCAGCAGCAAGTACAGAATGGGGTGAAGGTGTAAACGCCACTGCACGAGACAATTCTGTTGAGTGCCCAAGAAGACATCGTAATTCCCATGACTATCAGGTCGCTTGGCAAGACAATCTTGATCCTGACAACATGTCCTATGAGGAATTACTTGAGTTAGGTGAGGCTGTTGGAACTCAAAGCCGGGGTCTCTCCCAAGAACAGATCTCTTTGCTTCCAGTTTCCAAGTACAAGTGTGGGTTTTTTTTACGCAAAAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAGGAGAGGGGAAAAACGGATCACCTTACCTTGCAAGCATGTCTATCATGCTGGTTGCGCAACAACATGGCTTAGCATCAACAAGGCTTGCCCTATATGTTACATGGAGGTGTTTGCTGATATGTCAAAACGCAAATGA 999 0.4284 MDHRTDMDSFRTHCCRCPPPCELPHCNNPLVIGLIRYSYGFCILVRFFGKCTALNSEISIDEAHILQKICSLECLNEQLSEKEFKMSWNTNMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFAGASHAQESLYPSTTSLYKFGLSEPENTSYYRYSDGYEVNNHDPWMDEHRRPLENPAIFSEHTAAASTEWGEGVNATARDNSVECPRRHRNSHDYQVAWQDNLDPDNMSYEELLELGEAVGTQSRGLSQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYRRGEKRITLPCKHVYHAGCATTWLSINKACPICYMEVFADMSKRK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0087 332 FunFam E3 ubiquitin ligase BIG BROTHER 242 325 - -
Lele29g0087 332 SMART ring_2 280 320 IPR001841 -
Lele29g0087 332 Pfam Ring finger domain 279 320 IPR001841 -
Lele29g0087 332 SUPERFAMILY RING/U-box 276 327 - -
Lele29g0087 332 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 90 325 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lele29g0087 332 ProSiteProfiles Zinc finger RING-type profile. 280 320 IPR001841 -
Lele29g0087 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 325 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0087 Lele-ChrLele29 512678 519606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0087 93 329 C3H Transcription Factor Family AT3G63530 43.210 4.00e-64 201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0087 29 512678 519606 Lele31g1462 31 20029486 20033663 hybridization
Lele29g0087 29 512678 519606 Lele32g0085 32 500496 504411 hybridization