Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0086 ATGACCCATCCCTCCTTCCCCAATCATTTCAATCCCTGCTTTGACCTCAATTCTCCTTACTCCCTCCTCTCCTCTTCTTCTTTCACCAATTCACCTTCCTATAATTTTGTCTCTGCTCAACATCACTGCACTAATGGTACCTCTCGTATCCCTTCTCCCTACCACCAATCCTTGCCTTCCTCCCCTCCAGCTGTAAGAGAGCCCCTTCCTCTTCTTCGACTTAGCCCTTCCACCCCTAACGATCCACAATCTTCCTGCTCTTCCATGGAAATTCATGACAAGAACAAAGAGTTGGATGACCAAGCTGTGACGGTGGCTTTAAGCTTAGGGCTCCCAAGCGTGGATTCAACTGATTTAGTCTCAGACCAAGAACAAGTCGCCGTCGCTTCTGCGTCTCCATCTACTGGGATGAATAGGGGTCAGTACTGGATCCCTACCCCCTCTCAGATTCTGATCGGTCCGACGCAGTTCTCGTGCCCTCTTTGCTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCTGAATATAGAAAGGGGCCAGAGTCTCTGAGGGGAACGCAGCCAACAGCGATGCTGAGGCTGCCTTGCTATTGTTGCGCATCAGGATGCAAGAACAACATTGAGCATCCCAGGGCCAAACCACTCAAAGACTTCCGAACCCTTCAGACCCATTATAAGCGAAAGCACGGCATGAGGCCTTTCATGTGCAGAAAATGCCGCAAGTCATTTGCCGTGAGAGGTGATTGGAGGACCCATGAGAAGAATTGCGGCAAGCTCTGGTACTGCTCTTGTGGCTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAAGGCCTTTGGACATGCCCACACCGCTTGCGCCATTCATTCTCTTGATCAAGATGATGAACTCGCCTCTGAAATCGATCAAGAAATTCAGCCCTTCCACTACTAA 960 0.4917 MTHPSFPNHFNPCFDLNSPYSLLSSSSFTNSPSYNFVSAQHHCTNGTSRIPSPYHQSLPSSPPAVREPLPLLRLSPSTPNDPQSSCSSMEIHDKNKELDDQAVTVALSLGLPSVDSTDLVSDQEQVAVASASPSTGMNRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRKGPESLRGTQPTAMLRLPCYCCASGCKNNIEHPRAKPLKDFRTLQTHYKRKHGMRPFMCRKCRKSFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTACAIHSLDQDDELASEIDQEIQPFHY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0086 319 FunFam Zinc finger protein WIP2 210 292 - -
Lele29g0086 319 Gene3D Classic Zinc Finger 156 179 - -
Lele29g0086 319 Gene3D Classic Zinc Finger 199 292 - -
Lele29g0086 319 SUPERFAMILY beta-beta-alpha zinc fingers 223 261 IPR036236 -
Lele29g0086 319 PANTHER ZINC FINGER PROTEIN WIP2 35 312 IPR043584 GO:0003700|GO:0010468
Lele29g0086 319 SMART c2h2final6 157 179 IPR013087 -
Lele29g0086 319 SMART c2h2final6 267 290 IPR013087 -
Lele29g0086 319 SMART c2h2final6 241 261 IPR013087 -
Lele29g0086 319 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Lele29g0086 319 MobiDBLite consensus disorder prediction 47 88 - -
Lele29g0086 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0086 Lele-ChrLele29 508545 510616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0086 8 312 C2H2 Transcription Factor Family AT1G51220 57.485 2.08e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0086 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0086 29 508545 510616 Lele31g1463 31 20038999 20041064 hybridization
Lele29g0086 29 508545 510616 Lele32g0084 32 492055 494152 hybridization