Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0078 ATGAAAAATCTGCCAAAATACTCGACAGGCTTAATGTCATCCATAGCTGAAGTTGGGGACAAAGGCGACGCAGAACATAATCAAGACACTGAATCTTTTGCTGAAAGCCAAGCGGAAATGGCAGCGATGGAAAAGTTTCTGCAGTTCTCAGATTTTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTATGTTACTCACCCAAGAAGCATTGCAGAGAGGGTCAGAAGAACTAAGATCAGTGAGCGTATGAGGAAACTACAAGATCTGGTCCCCAACATGGACAAACAAACAAACACAGCAAACATGTTGGACTTGGCTGTTGACTACATTAAAGACCTCCAACAGCAGGTTGAGGGGTTCGCTTTGGCATTAAATGGGGAGGGGAACATGGGGGAGGTCCTACGTGGCCATATGATGAGGCTTTGGGTTCTGCTTTTCCTCCTTATTCGGGTTTTTTCCAATAATGTCATATCGGTGGTGGTTATTCCATTTTCGTAA 498 0.4458 MKNLPKYSTGLMSSIAEVGDKGDAEHNQDTESFAESQAEMAAMEKFLQFSDFVPCKIRAKRGYVTHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTANMLDLAVDYIKDLQQQVEGFALALNGEGNMGEVLRGHMMRLWVLLFLLIRVFSNNVISVVVIPFS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0078 165 Gene3D - 65 127 IPR036638 GO:0046983
Lele29g0078 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 113 IPR011598 GO:0046983
Lele29g0078 165 SMART finulus 69 119 IPR011598 GO:0046983
Lele29g0078 165 FunFam Transcription factor bHLH130 family 64 125 - -
Lele29g0078 165 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Lele29g0078 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 119 IPR036638 GO:0046983
Lele29g0078 165 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0078 Lele-ChrLele29 466884 468584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0078 16 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 61.682 7.30e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele29g0078 HLH 6.2e-10 No_clan