Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0064 ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACCGAGGATGCTCCCATAGATTACTACAGCGACTGCGATGATGTTGCTGATGATTACTTTGACGATGGCGATGAATCTGACAAGACTTCTTCTCGTCCTGAGCAAAATTTTACCATCTTGAGGGAATCAGATATTCGGCAAAGACAAGAGGATGACATAACAAGAGTAGCGACTGTTCTTTTTATCTCGCCAGAGGCTGCAAGCATCTTACTTCGTCACTATAATTGGAATGTCAGTGAAGTGCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGAAGGACAGTTGGCTTACTGGAGAATCCAGTTGTCCAGTTTGCTAACGCTAGGGAGCTTAATTGTGGAATCTGTTTTGAAACTTATCCCTGTTCACGGATTAAATCTGCTGGTTGTGGTCATCCCTTCTGCATCTCATGCTGGGAAGGGTATGTTGGCACGGCTATTAGTGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCGATTGGCATCTGTTGAGGATAAGCAGAAGTATTCTCGCTACCTTCTTAGGTCCTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCGGTTACATTTGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCATTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATTCTCGCCAACTCCAAGCCCTGTCCCAAGTGCAAGCGACCGATTGAGAAAAATCAAGGGTGCATGCATATGACATGTACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGGGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGATGAAGCTGAAAGACGAAGAGAGATGGCAAAGAACTCATTGGAGAGATACACGCATTATTATGAGCGGTGGGCTAGCAATCAATCATCGAGGCAGAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTCCATCTTGAGAAGCTTAGCGACATACAGTGCCAACCCGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAATGGACATATGCATATGGATACTACTTACCAGAGCATGAGCATGCTAAAAAACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTAGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAACAGTATCTCAATGCTGATGGCCCATCTAAAGAGTTCAATGACTTCCGGACCAAGCTTGCTGGACTAACCAGCGTGACTAAAAACTACTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATCTGATGTAGGTAGTAATGGGGCTACTTCGAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGCAACAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAAGTACACGAAGTAGCAATTCCTATAAAATGACGGCTGATAATGTATTGTGA 1698 0.4464 MDSEDDMHDANDVESLDDDFYSGETEDAPIDYYSDCDDVADDYFDDGDESDKTSSRPEQNFTILRESDIRQRQEDDITRVATVLFISPEAASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLENPVVQFANARELNCGICFETYPCSRIKSAGCGHPFCISCWEGYVGTAISDGPGCLMLRCPDPSCGAAVGQDMIDRLASVEDKQKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCIEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVGSNGATSSKATSSKNAAGNSKGRGGRGKGSTRSSNSYKMTADNVL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0064 565 Pfam IBR domain, a half RING-finger domain 286 334 IPR002867 -
Lele29g0064 565 Pfam IBR domain, a half RING-finger domain 207 269 IPR002867 -
Lele29g0064 565 ProSiteProfiles Zinc finger RING-type profile. 138 182 IPR001841 -
Lele29g0064 565 Coils Coil 348 375 - -
Lele29g0064 565 MobiDBLite consensus disorder prediction 546 565 - -
Lele29g0064 565 MobiDBLite consensus disorder prediction 1 59 - -
Lele29g0064 565 SMART ibrneu5 273 343 IPR002867 -
Lele29g0064 565 SMART ibrneu5 207 269 IPR002867 -
Lele29g0064 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 221 IPR013083 -
Lele29g0064 565 MobiDBLite consensus disorder prediction 521 539 - -
Lele29g0064 565 Pfam Ariadne domain 356 517 IPR045840 -
Lele29g0064 565 ProSiteProfiles TRIAD supradomain profile. 134 347 IPR044066 -
Lele29g0064 565 FunFam RBR-type E3 ubiquitin transferase 270 520 - -
Lele29g0064 565 SUPERFAMILY RING/U-box 288 336 - -
Lele29g0064 565 SUPERFAMILY RING/U-box 134 219 - -
Lele29g0064 565 Gene3D - 265 520 - -
Lele29g0064 565 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 435 IPR031127 GO:0004842|GO:0016567
Lele29g0064 565 CDD RING-HC_RBR_TRIAD1_like 138 188 - -
Lele29g0064 565 MobiDBLite consensus disorder prediction 1 48 - -
Lele29g0064 565 FunFam RBR-type E3 ubiquitin transferase 132 221 - -
Lele29g0064 565 SUPERFAMILY RING/U-box 208 276 - -
Lele29g0064 565 MobiDBLite consensus disorder prediction 521 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0064 Lele-ChrLele29 363472 369240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0064 17 542 ARIADNE family AT1G65430 73.019 0.0 806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0064 29 363472 369240 Lele31g1483 31 20187218 20192872 hybridization
Lele29g0064 29 363472 369240 Lele32g0067 32 379858 385277 hybridization