Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0063 ATGGACTCCGAGGGTGATATGCATGATGCCAACGATATCGAGTCCCTAGATGATGATTTCTACAGCGGCGAGACAGAGGATGTTCCTTTGGATTACTACAGCGACTACGATGATGATGCTGATGATTACTTTGACGATGGGGATGAATCTGACAAGATCGAGTCTCGTCGCCCCGAGCAAAATTTCACCATCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGGATGATATCACAAGGGTAGCAACCGTTCTTTTTATCTCACGAGTTGATGCATCCATTTTACTTCGTCACCATAATTGGAATGTCAGCGAAGTGCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGAAAAAGCCAGTTGTCCAGTTTCCTAATGCTAGGGAGCTTACCTGTGGCATTTGTTTTGAAACTTATCCTTGTTCACGGATTGAGTCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGATATATTGGTATGGCTATTAATGATGGTCCAGGATGTTTGATGCTGCGGTGTCCTGATCCATCTTGTGGTGCAGCTGTTGGTCAAAATATGATTGATCAATTAGCTTCTCATGAGGATAAGCAGAAGTATTCTCGTTACCTTCATAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCGTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTGCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATACTTGCGAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTGTGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGCGGTTTCTATGCTTGCAATCGTTATGAGGAAGCTAAGCAAGAGGGAGTGTATGATGACACTGAAAGAAGAAGAGAAATGGCGAAGAATTCCTTGGAAAGATACACACATTATTATGAGCGGTGGGCTAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCGGATCTTCATCAGATGCAAACAGTCCATCTTGAGAAGCTTAGTGACATACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCCTATGGGTACTATTTACCAGAGCATGAGCATGCTAAAAAACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTGCGTCAGTATCTCATTGCTGATGGCTCATCTAAAGAGTTTAATGACTTCCGAACCAAACTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTGCCTGATGTGGATAGTAATGGGGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCCCCCGGAAGCAGCAAGGGTAGAGGTGGAAGAGGAAAAGGAACCACTCGAACAAGCGGTTCCAACAAAATGACTGATGATAGTAATTGGTATTGTGAACACTGTACCTATGCAAATACTATGTCTGTTAACACATGCCAAATGTGCGCTATACAGCGTCGATAA 1773 0.4411 MDSEGDMHDANDIESLDDDFYSGETEDVPLDYYSDYDDDADDYFDDGDESDKIESRRPEQNFTILKESDIQQRQEDDITRVATVLFISRVDASILLRHHNWNVSEVHEAWFANEEHVRRTVGLLKKPVVQFPNARELTCGICFETYPCSRIESAACGHPYCISCWEGYIGMAINDGPGCLMLRCPDPSCGAAVGQNMIDQLASHEDKQKYSRYLHRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVSCLCSYCFCWNCTEEAHRAVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEEAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELRQYLIADGSSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLPDVDSNGAASSKATSSKNAPGSSKGRGGRGKGTTRTSGSNKMTDDSNWYCEHCTYANTMSVNTCQMCAIQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0063 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Lele29g0063 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Lele29g0063 590 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Lele29g0063 590 MobiDBLite consensus disorder prediction 522 540 - -
Lele29g0063 590 SUPERFAMILY RING/U-box 289 337 - -
Lele29g0063 590 SMART ibrneu5 274 344 IPR002867 -
Lele29g0063 590 SMART ibrneu5 208 270 IPR002867 -
Lele29g0063 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 220 IPR013083 -
Lele29g0063 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Lele29g0063 590 Pfam IBR domain, a half RING-finger domain 287 334 IPR002867 -
Lele29g0063 590 MobiDBLite consensus disorder prediction 1 59 - -
Lele29g0063 590 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Lele29g0063 590 MobiDBLite consensus disorder prediction 11 48 - -
Lele29g0063 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Lele29g0063 590 SUPERFAMILY RING/U-box 209 277 - -
Lele29g0063 590 SUPERFAMILY RING/U-box 135 217 - -
Lele29g0063 590 Gene3D - 268 521 - -
Lele29g0063 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Lele29g0063 590 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Lele29g0063 590 MobiDBLite consensus disorder prediction 522 559 - -
Lele29g0063 590 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Lele29g0063 590 Pfam Ariadne domain 357 519 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0063 Lele-ChrLele29 355957 361593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0063 17 585 ARIADNE family AT1G65430 70.157 0.0 819