Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0054 ATGTCTTCCATTGCCATCTCTTACGGGGAGAAGGGTTCTGTTTTTTGTGGTCTGAGATCAGATGGGTCTCGTACTGTGAACTGTTACGGATCAAACTCGGCCATAGTCTATGGAATACCAACTCATTTCCCACTTCTGGGTCTAACCGCAGGTGATGGCTTTGTCTGTGGACTCCTAATGGATACTTGCCAACCTTATTGTTGGGGTAGCAGTGGCTACATCGAAATGGGTGTTCCACAGCCTATGACGAAAGGAGCAGAGTATCTAGAAATCAGTGCTGGGGATTATCATGTTTGTGGATTGAGGAAACCCTTGACAGGAAGACAGAGAAATATTTCTCTTATCGATTGTTGGGGTTACAACATGACCCAGAACTACGTTTTTGATGGCCAGATTCAATCTATCTCGGCAGGTTCTGAATTCAACTGTGGGTTATTTTCCCAGAACAGAACAGTCTTCTGCTGGGGCGATGATACTAGTAGCAGGGTAATCAGTCTAGTTCCTAAAGATAAGAAGTTCCAGAAGATTTCTGCAGGTGGGTTTCATGTGTGTGGAATTTTAGAAGGGGTGAATTCCAGAACTATTTGTTGGGGAAGGAGCTTGGGCATTGAGGAAGAAATTGCTGTGAAACGTTCTGCTCAAGGCAACGTCGATTTGGCTCCAAATGAATCTATGCTCTCTGTTGTGGGGGGAAGATTTCATGCTTGTGGCATCAAAACTTATGATCATGGGGTGATTTGCTGGGGTTTTACTATCAAGGGAAGCACCCCAGTTCCTAGTGGGATTAAGGCATTCGAGATTGCTGCTGGGAATTATTTTACTTGTGGAATACTTGCTAAGAAATCTCTTCTTCCTTCTTGCTGGGGTGTTGGATTCCCTTCTTCTCTCCCATTAGCTGCCTCTCCTGGACTATGCCAGCCTAATCCATGTCCTCCTGGTTTCTATGAAATTGAACAGCAAAAGGGTCTTTGCAAGTCCTCGGATTCTCGGTTTTGCATGCCATGCAGTGGAGCTTGTCCTGCTGACATGTATCAGAAAAGTGAGTGCAATTATACATCTGACAGACAATGTGAATACAACTGTTCTAGTTGTTCCTGCCCTGAATGCTTCTCCAATTGCTCATTTTCAGATTCAAATGCTAACACGGGGAAGAAAGATGAGAAATTTTGGTCTTTGCAGTTGCCAGTGATGGTTGCTGAGATTGCTTTTGCTGTCTTCTTTGTTAGTCTAGTGACCTTAACTTCTGTATTATATGTTCGCTACAAGCTACGAGGTTGCAGGTGTTCCATAGAAGGATCAAACGTGAAGAAACTTCATGGAAGCAACTCTTCCCTCCAAAAAGAGAACAGCAAGATCAGCCCGGACTTAGAGGAGCTCAAGATCAGGAGGGCTCAAACATTTACCTACGAGGAAGTTGAAAGAGCAACAGGTGGGTTCAAGGAAGAATCCATAGTTGGTAAAGGAAGCTTTTCTTGTGTATTCAAAGGAGTATTGAAAGATGGGACTGTTGTAGCGGTTAAAAGGGCCATAATGTCTCCCAACATGCAAAAGAATTCCAAAGAGTTTCACACAGAACTTGACTTACTTTCCAGGTTGAACCATGCCCATTTACTCAACCTGCTAGGGTATTGTGAAGAAGGCGGAGAGAGACTTCTTGTTTATGAGTTCATGGCGCATGGCTCCTTGCACCAACATCTCCATGGGACAAACAAGACCTCCAAAGAGCAGTTGGATTGGGTTAGAAGGGTCACAATCGCAGTTCAAGCAGCCAGAGGAATTGAGTATTTACATGGCTATGCCTGCCCACCTGTGATTCACAGAGACATCAAATCTTCAAACATCCTCATTGATGAAGAACACAATGCTAGAGTTTCCGATTTTGGCTTGTCATTACTGGGTCCTGCCGATAGTAGCTCGCCCTTGGCTGAGCTACCTGCCGGCACGCTCGGCTATCTTGATCCTGAATATTACAGACTTCATTACCTTACCACAAAATCTGATGTATATAGCTTTGGTGTGCTGCTCCTGGAAATTCTGAGCGGTAGAAAAGCCATTGACATGCAATACGAAGAAGGGAACATAGTTGAATGGGCCGGGCCTTTGATTAAGGCGGGAGATATAACGGCAATTTTAGACCCAGTTCTAAAACCTCCTTCTGATATCGAAGCCTTGAAAAGGATTGCGAACGTGGCCTGTAAATGCGTGAGGATGAGAGGGAAAGAGAGGCCATCAATGGACAAAGTGACAACTGCTTTGGAGCGAGCTCTGGCACAGCTAATGGGTAGCCCAAGTAACGAGCAGCCGATTTTGCCGACCGAGGTGGTGTTGGGAAGCAACAGATTACACAAGAAATCGTCTCAGAGATCTTCGAACAAGTCAACTTCAGAAACGGACGTAGGAGAAGCGGAGGATCAAGGGTTCGAGTTCAGAGCACCGTCGTGGATAACTTTTCCGAGTGTAACTTCATCTCAAAGAAGGAAGTCGTCGGTGTCGGAGGGGGACGTGGAAGGGAAGAATCCAGAAGTGAAGAACTTGGGGAACGTGGGAGGTGGTGGTGACGTGTTGAGGAGTCTAGAGGAAGAGATTAGACCCGCTTCTCCTCAAGAGAGGCTGTTTTTGCAGCACAACTTCTGA 2634 0.4556 MSSIAISYGEKGSVFCGLRSDGSRTVNCYGSNSAIVYGIPTHFPLLGLTAGDGFVCGLLMDTCQPYCWGSSGYIEMGVPQPMTKGAEYLEISAGDYHVCGLRKPLTGRQRNISLIDCWGYNMTQNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDDTSSRVISLVPKDKKFQKISAGGFHVCGILEGVNSRTICWGRSLGIEEEIAVKRSAQGNVDLAPNESMLSVVGGRFHACGIKTYDHGVICWGFTIKGSTPVPSGIKAFEIAAGNYFTCGILAKKSLLPSCWGVGFPSSLPLAASPGLCQPNPCPPGFYEIEQQKGLCKSSDSRFCMPCSGACPADMYQKSECNYTSDRQCEYNCSSCSCPECFSNCSFSDSNANTGKKDEKFWSLQLPVMVAEIAFAVFFVSLVTLTSVLYVRYKLRGCRCSIEGSNVKKLHGSNSSLQKENSKISPDLEELKIRRAQTFTYEEVERATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGTNKTSKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAGPLIKAGDITAILDPVLKPPSDIEALKRIANVACKCVRMRGKERPSMDKVTTALERALAQLMGSPSNEQPILPTEVVLGSNRLHKKSSQRSSNKSTSETDVGEAEDQGFEFRAPSWITFPSVTSSQRRKSSVSEGDVEGKNPEVKNLGNVGGGGDVLRSLEEEIRPASPQERLFLQHNF 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0054 877 SUPERFAMILY RCC1/BLIP-II 220 292 IPR009091 -
Lele29g0054 877 Gene3D Phosphorylase Kinase; domain 1 449 556 - -
Lele29g0054 877 Pfam Protein tyrosine and serine/threonine kinase 482 751 IPR001245 GO:0004672|GO:0006468
Lele29g0054 877 MobiDBLite consensus disorder prediction 779 796 - -
Lele29g0054 877 SUPERFAMILY RCC1/BLIP-II 13 200 IPR009091 -
Lele29g0054 877 MobiDBLite consensus disorder prediction 778 805 - -
Lele29g0054 877 SUPERFAMILY Protein kinase-like (PK-like) 458 752 IPR011009 -
Lele29g0054 877 FunFam Serine/threonine-protein kinase-like protein CR4 1 164 - -
Lele29g0054 877 CDD STKc_IRAK 485 754 - -
Lele29g0054 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Lele29g0054 877 ProSiteProfiles Protein kinase domain profile. 479 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0054 877 SMART serkin_6 479 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0054 877 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 309 357 IPR001368 GO:0005515
Lele29g0054 877 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 877 - -
Lele29g0054 877 MobiDBLite consensus disorder prediction 820 853 - -
Lele29g0054 877 Gene3D Transferase(Phosphotransferase) domain 1 557 767 - -
Lele29g0054 877 Gene3D - 45 301 IPR009091 -
Lele29g0054 877 FunFam serine/threonine-protein kinase-like protein CCR1 449 556 - -
Lele29g0054 877 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524
Lele29g0054 877 FunFam Receptor protein kinase CRINKLY4 557 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0054 Lele-ChrLele29 318555 321188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0054 1 877 Receptor kinase-like Gene Family AT3G59420 69.570 0.0 1246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lele29g0054 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0054 29 318555 321188 Lele31g1492 31 20228552 20231311 hybridization
Lele29g0054 29 318555 321188 Lele32g0056 32 335350 338109 hybridization