Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0045 ATGAAAATCCAGTGCGATGTGTGTGAGAAAGCTCCCGCAACGGTGATTTGTTGCGCTGACGAGGCTGCTTTATGTGCTAAATGCGACATTGAAGTTCATGCTGCCAACAAGCTAGCCAGCAAGCACCAGAGGCTTCTCCTTCAGTGCCTCTCTACCAAGCTTCCCACATGCGACATCTGCCAAGACAAGCCAGCTTTTATATTTTGCGTTGAAGACAGAGCGCTGTTCTGTGAAGCTTGTGATGAACCAATTCATTCAGCTGGCAGCCTTTCTGCAAACCACCAGCGCTTCCTGGCAACCGGTATTCGGGTGGCTTTGAATTCGGACTGCTCCAAGGACAACGAAGAACGTCGCTTGGAGCCACCTAATCGGAGTGCTCAACAAGCTTCTGCAAAAGCCCCCCTTCAGCCTCAGCAAGTTCCGACCTTCACATCCTCTTGGGCTGTGGATGACTTGTTGGAATTCACTGACTTCGAATCGCCTGACAAGAAAGAATCACTGGAGTTTGGAGAGCTGGAATGGTTATCGGATGTGGGTCTTTTCGGAGAACAATTTCCTGGTGGGGAGGCGTTGGCGGCAGCTGAAGTCCCACAGCTTCCAGTAACACCAGCTAGCAACGTTGCCTCATACAGACCCTCTAAGTCTTTCATGTCTCTCAAGAAGCCTCGGATTGAATTTGAAGACGATGATGAGCACTTTACAGTGCCTGATCTTGGTTGA 720 0.5014 MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSTKLPTCDICQDKPAFIFCVEDRALFCEACDEPIHSAGSLSANHQRFLATGIRVALNSDCSKDNEERRLEPPNRSAQQASAKAPLQPQQVPTFTSSWAVDDLLEFTDFESPDKKESLEFGELEWLSDVGLFGEQFPGGEALAAAEVPQLPVTPASNVASYRPSKSFMSLKKPRIEFEDDDEHFTVPDLG 239
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0045 239 MobiDBLite consensus disorder prediction 113 137 - -
Lele29g0045 239 Gene3D Classic Zinc Finger 1 92 - -
Lele29g0045 239 MobiDBLite consensus disorder prediction 123 137 - -
Lele29g0045 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele29g0045 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Lele29g0045 239 CDD Bbox1_BBX-like 57 98 - -
Lele29g0045 239 CDD Bbox1_BBX-like 5 47 - -
Lele29g0045 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele29g0045 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lele29g0045 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele29g0045 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele29g0045 Lele-ChrLele29 280518 282028 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0045 1 163 Orphan Transcription Factor Family AT1G06040 68.452 6.37e-68 205
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele29g0045 zf-B_box 6.2e-08 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0477 11 4587647 4589161 Lele29g0045 29 280518 282028 CCT
Lele29g0045 29 280518 282028 Lele31g1500 31 20267994 20269482 hybridization
Lele29g0045 29 280518 282028 Lele32g0046 32 291629 293162 hybridization