Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0031 ATGGAATACCCTTCTTCTCATAAAGGAAAAGACAGTGGATACTGGAATTCACCTCGAGCCCAGTTGGAGGGACCAGCATCTTTAGATGGTAGCACAAAAAATTCAATTCCAGAGGATATGCTTAGCACCTTCTCTGACCTCATAAATTTTGATACTTATGCTGGTTGGTGCAATGGCTCATCAACCACAGATCAGGTTTTAGCAAATGGGCTTTCATCATATGCCTCGGTACCATATGCATCACTTGATGGACTCAATTTAGTGGAGGAGAGCAGTGTATCATTCTTGGCAAGTGATGTTAATAAGAATTACAATGTGATAAGAAGTTTCCCCAACTCTAGAGAGAAAGTTGCATTTCAGCAAATGGAGGCCCAACTTGAGTTCTCTGATGATGGAAATGATGCTGGGAACTTAAATTATAAACGTCGTCTTAATGAATCTTTTGAAGAACTTAGTAACTTAGAAATGGGCAATTATATAGTTTGTAGGCCACCTGGCTGGTCACTAGATGAGAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCTGCTGGTGGGGGAATCTTGGCACAAGTTTGGGTACCAATAAAGCATGGAAACCAATTCATCTTAACCACAAGTGAGCAACCCTATTTGCTGGACCAAGTGCTTGCAGGTTATCGTGAAGTGTCGAGGACATTTACATTCTCAGCAGAAGGAAGGCCGGGCTCTGTCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACGTCCAATGTTGGTTACTATACTAAGGCTGAATATTTGAGGATTGAGCATGCGATTAATCATGAGGTTCGTGGATCAATTGCTGTTCCAGTGTTTGATCTTTACTCTGAAATGCCGTGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGACTGATTTTGATAGAGAACTGGAAATTGTTTGCCAAGCACTCCAGGTTGTGAATTTAAGGACTACCGTGATGCCCCGTCTTCCTTTCCAGAGTCTCTCAAATAACAAAAGAGCAGCTTTAATGGAGATAATTGACGTGTTACGGGCTGTGTGTCATGCACATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAATTGGCAATGAAACTATGAGAGTGCTAAGTAAGGAGGGTCATTCAAGTTCTAGTGAAAAATGTGTATTATGCATCGAGGAATCAGCTTGCTATGTTAATGATAGAATGATGGAAGGATTTGTTCATGCATGCGTTGAGCATCATCTTGAGGAAGGGCAAGGTACAGCTGGCAAAGCTATCCAGTCAAATCAGCCTTTCTTCTATCCTGATGTCAAGACATATGATGTTGGTGAATATTCTCTTGTTCAACATGCACGCAAATACAATTTGAATGCTTCGGTTTCTATCAGGCTAAGGAGTACCTTCACTAATGATGATGATTACATCTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGAAGCAACTTTTATTGGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACAGTTACTGATGCTGAATTATCAGGAATATCAGGGTCACTGGTAAATCTTCAAAATGAAAAAGTACGAGATTTTTTGCCTAAATCTAGGAGAAACTCTCAAATAGAATTGACGGATGGTGACAAGGACTCAGGCAGTAAGACTTCATTGAAGGCTTGCAACTTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGGAAATGAATGGGTCAAAAAGGCAGGTTGAGAAAAAGAGAAGCACGGGTGAGAAGAATGTCAGCTTGAGTGTTCTTCAGCAATACTTTTCTGGTAGTCTAAAGGATGCTGCTAAGAGCATTGGCGTTTGTCCTACAACTCTGAAACGGATATGCAGGCAACATGGCATTTCGAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACTGTGCTTGATTCTGTTCAGGGAGTGGAAGGAGGGCTTAAGTTTGACCCATCTACTGGGGGGTTTGTGGCAGGAAGATCAATCATTCAAGAATTTGATGCACATGGTCGTCTTTTGTTCTCTGAGAAGAGTATGCCAGTACAAGATCCTGAGTGTGTTACAAAATGTACAGTCTCAGTGCCTACTGAACCTTGTAGTGAAGGAGAGAATTTGGCAGTTAAGTTGGAAGATAATGATGTTTATTTGGCTGATGACCAGCTTGCGTGCTCACTAGGTGTAATTATCCCAAATTCTGGCGAGGGAGAATTGAAGAAAGCCAAAACTTCTTTAGTTGATTGTAGTCCGGATTCAAAATCAATGTCCTTGGATAATGGATCATGCCGGATGGTCAAGGCTCAGGGTTGTCCTGAGCAAGCATGTCTTGGTTCAGTTGCTACAACATGGGGTCTGAACAAGGATGGTCAGGGAGCGAAAAATTCTTATCCTGATATTGTCTCTTGGAGTTCAAGCTCTCTAGTTGCTGATGAGATGGAAAATATTATGGATGGGGACAATGGGATTGTTGAACATAGCCAACCTACTTCTTCAAACGTGACAGACTCATCCAATGGTTCAGGTTCAATGATCCATGGCAGTTCGTCTGGTGCTCAAAGCTTTGAGGATCAGAAGCATTCCAAAGTCAAACCAACGCTTGTTGACAGTGGATCAAAAATTATTGTGAAAGCCGCCTATAAAGATGATACTATACGTTTCAAGTTTGACCCATCTGCAGGTTGTTTCCAACTATACGAAGAAGTGGCAACAAGGTTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTAAATGACTCAGATTTGCAAGAGTGCGTAGAAATATGGGAAGCTATGGGCACACGTAGCTTGAAGTTTCTTGTTCGTGATACGCCTTGCTTCGTAGGCAGCTCCAGTAGTAGCAGTTGCTTCGTGGGAGGCTCCTAG 2988 0.418 MEYPSSHKGKDSGYWNSPRAQLEGPASLDGSTKNSIPEDMLSTFSDLINFDTYAGWCNGSSTTDQVLANGLSSYASVPYASLDGLNLVEESSVSFLASDVNKNYNVIRSFPNSREKVAFQQMEAQLEFSDDGNDAGNLNYKRRLNESFEELSNLEMGNYIVCRPPGWSLDERMLRALSLFKESAGGGILAQVWVPIKHGNQFILTTSEQPYLLDQVLAGYREVSRTFTFSAEGRPGSVLGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHEVRGSIAVPVFDLYSEMPCCAVLELVTTKEKTDFDRELEIVCQALQVVNLRTTVMPRLPFQSLSNNKRAALMEIIDVLRAVCHAHSLPLALTWIPCCYLKGIGNETMRVLSKEGHSSSSEKCVLCIEESACYVNDRMMEGFVHACVEHHLEEGQGTAGKAIQSNQPFFYPDVKTYDVGEYSLVQHARKYNLNASVSIRLRSTFTNDDDYILEFFLPVNMRGSSEKQLLLDNLSGTMQRICKSLRTVTDAELSGISGSLVNLQNEKVRDFLPKSRRNSQIELTDGDKDSGSKTSLKACNLRNNGIEAAYNQEMNGSKRQVEKKRSTGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSTGGFVAGRSIIQEFDAHGRLLFSEKSMPVQDPECVTKCTVSVPTEPCSEGENLAVKLEDNDVYLADDQLACSLGVIIPNSGEGELKKAKTSLVDCSPDSKSMSLDNGSCRMVKAQGCPEQACLGSVATTWGLNKDGQGAKNSYPDIVSWSSSSLVADEMENIMDGDNGIVEHSQPTSSNVTDSSNGSGSMIHGSSSGAQSFEDQKHSKVKPTLVDSGSKIIVKAAYKDDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEIWEAMGTRSLKFLVRDTPCFVGSSSSSSCFVGGS 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0031 995 SUPERFAMILY CAD & PB1 domains 892 980 - -
Lele29g0031 995 Pfam PB1 domain 899 977 IPR000270 GO:0005515
Lele29g0031 995 MobiDBLite consensus disorder prediction 1 34 - -
Lele29g0031 995 PANTHER PROTEIN NLP8 116 989 IPR045012 GO:0003700
Lele29g0031 995 MobiDBLite consensus disorder prediction 843 886 - -
Lele29g0031 995 MobiDBLite consensus disorder prediction 847 879 - -
Lele29g0031 995 CDD PB1_NLP 897 977 IPR034891 -
Lele29g0031 995 Pfam RWP-RK domain 603 651 IPR003035 -
Lele29g0031 995 ProSiteProfiles PB1 domain profile. 896 978 IPR000270 GO:0005515
Lele29g0031 995 Gene3D - 893 978 - -
Lele29g0031 995 SMART PB1_new 896 978 IPR000270 GO:0005515
Lele29g0031 995 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0031 Lele-ChrLele29 208497 213237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0031 1 993 NLP Transcription Factor Family AT2G43500 47.869 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele29g0031 PB1 1.4e-16 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0031 29 208497 213237 Lele31g1511 31 20345520 20350275 hybridization
Lele29g0031 29 208497 213237 Lele32g0031 32 211955 216625 hybridization