Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2115 ATGGGAAACGCCAACGGCAAAGAAGATGGAGCCATTGGCAGCGATGATCGATCCGCCGCTGAATCTGGCATCCCTAGCAGTTGCGCGCCGACTTCTCAGCCTCCAGTTCGGGCTGCTTCAATCGATCCCATGGCGAATAGTCCGCCTCCTAGTCCTGGTCGATCTCGATCACCGGTCTTGTTCGCTCCTCAGGCTCCTCTAGCTCCACTGCAAAGAGGTAATGGCCCTCATTTTCTCAACCAAATGTGGCAGAATGAATCTCATGGGATTGTTGATCAATCTCCTGAGCGAGGAGTCCCTGTCATGATTACATGGAGTTATGGTGGAAACAATGTGGCTGTGCAGGGATCCTGGGATAATTGGACTTCGAGGAAGCAACTGCAGAGAGCTGGCAAAGATCATTCGATTGTTATGGTCCTCCCTTCTGGCATATATCATTACAAGTTCGTTGTTGATGGTGAACAGAGATATATACCTGAACTTCCTTATGTAGCTGATGAGATGGGTTGTGTCTGCAATCTTCTTGATGTTAATGATTATGTACCTCAAATTCCCGAGAGTATCAGTGAATTTGAGCCTCCACCCTCTCCAGAAGCCAGTTATGGCCAAGCGTTTCCAGCTGAAGAAGACTTTGCCAAAGAACCAATGGCGGTTCCTCAACAGCTGCATCTGACTGTCCTTGGTATGGAGAATTCAGATGTAGGTACCCCTTCAAAGCCTCAACACGTTGTGCTAAACCATGTTTTCATTAAAAAAAGCTTGGCCGCCCAGTCTGTGGTTGCCCTGGGACTGACTCACAGGTTCCAGTCCAAATATGTGACCGTTCTTCTCTACAAACCACTCAAAAGCTGTACTATTCCTTATCCTTTCGCATCTGGTCTAGTTGAAATTTCTGTGGCTTGCCTTTGGTGTGCTTTTACTAGTAAAGCTAGTAGAATTGTGTTGGCTGCAGGATAA 957 0.4744 MGNANGKEDGAIGSDDRSAAESGIPSSCAPTSQPPVRAASIDPMANSPPPSPGRSRSPVLFAPQAPLAPLQRGNGPHFLNQMWQNESHGIVDQSPERGVPVMITWSYGGNNVAVQGSWDNWTSRKQLQRAGKDHSIVMVLPSGIYHYKFVVDGEQRYIPELPYVADEMGCVCNLLDVNDYVPQIPESISEFEPPPSPEASYGQAFPAEEDFAKEPMAVPQQLHLTVLGMENSDVGTPSKPQHVVLNHVFIKKSLAAQSVVALGLTHRFQSKYVTVLLYKPLKSCTIPYPFASGLVEISVACLWCAFTSKASRIVLAAG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2115 318 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 212 280 IPR006828 GO:0005515
Lele28g2115 318 SUPERFAMILY AMPKBI-like 181 281 IPR037256 -
Lele28g2115 318 MobiDBLite consensus disorder prediction 1 60 - -
Lele28g2115 318 CDD E_set_AMPKbeta_like_N 100 177 - -
Lele28g2115 318 MobiDBLite consensus disorder prediction 20 34 - -
Lele28g2115 318 Gene3D - 187 281 - -
Lele28g2115 318 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 282 IPR043554 -
Lele28g2115 318 SMART AMPKBI_2 194 281 IPR006828 GO:0005515
Lele28g2115 318 Pfam Glycogen recognition site of AMP-activated protein kinase 99 179 IPR032640 -
Lele28g2115 318 SUPERFAMILY E set domains 97 179 IPR014756 -
Lele28g2115 318 Gene3D Immunoglobulins 91 181 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2115 Lele-ChrLele28 24015727 24019868 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g2115 28 24015727 24019868 Lele01g1622 01 11265780 11266607 CCT
Lele28g2115 28 24015727 24019868 Lele02g1981 02 23449674 23452589 CCT
Lele28g2115 28 24015727 24019868 Lele03g1614 03 10539437 10540264 CCT
Lele28g2115 28 24015727 24019868 Lele04g1930 04 23800479 23801306 CCT
Lele25g2062 25 27933373 27937935 Lele28g2115 28 24015727 24019868 hybridization
Lele26g2117 26 24203845 24208929 Lele28g2115 28 24015727 24019868 hybridization