LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g2113	ATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCCGAACCCGCCAAGATCTCGGATTCACAACCTGCACAACAAGAACAACCCCAAGAACAGCAAATCCACGAGGAAGTTAGAGAGGACGAACAACCAAGGCCTGTAGCAACCCTAGAAGAAGAGCACCAGGGACATGAAACGATGGCCGTGGATGATGATAAGCATCAGGAAGATGTAAAATTAGAAGGAAACGAGGATGTAAGTGCACCTCCAGAAGTTCACCCTCAAGAGCAGGATATCGAGCCCCCCGAAACCGCGGAAGCTGCAGCTGATGCGGCGCCATCTGAATCAGTTCAGGCTGATGCGAATGGAGCCGAGGTTGGAAATGAGAACGATGATGATGTCGAGGTTTTGGACGAAGAGGAGCCTTTAGAGAAGCTTATCGAGCCTTTTACGAAGGAGCAGCTGTACACTCTTGTCAAGCAAGCTGCAGAGAAGTACCCAGATTTTATCGACAACGTCCGTCAACTGGCGGACGTGGACCCCGCCCACAGAAAAATCTTCATCCACGGTCTTGGCTGGGACACTACTGCCGAAACCCTCACAAGTGTTTTTGGGAAATATGGCGAGATTGAGGATTGCAAGGCTGTCATCGATAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCCTGTTCAAACATCGAAGTGGGGCTCGGAAGGCGCTGAAACAACCACAGAAAAAGATCGGGAACCGAACCACATCGTGTCAATTAGCATCCGCGGGACCGGTCCCCTCGCCTGCTGCAGTGGCCCCGCCGGTATCTGAATATACTCAAAGGAAGATCTTTGTTAGCAATGTAAGTGCAGAAATCGATCCCCAAAAATTGCTTGAGTTCTTCGGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCAAAGGGATTTGCATTGTTTGTATACAAGTCAGTAGAAAGTGCAAAGAAGGCTTTGGAAGAACCGCACAAAAATTTTGAAGGGCATACACTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCATCATTCTCATCATCATCAACCTCACTACCAGCCAAGAAAAGAGAAGAATAAGTATCAGTCTGGCGGGCATGGACCAGGACCCGGACACCTTATGGCACCCTCAGCTCCTTCTGTAGGTTTCAATCCTGGAGTGGCTGCACAGGGGCTAAATCCAGCCCTTGGTCAGGCCTTGACTGCTTTGCTTACTACCCAAGGTACTGGGCTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGTGGTGCACCCTCAAACCAGGCTGGGCCTCCTGCTGGATATGTCAATCAGCCTGCTTTGGGCTACGGGAACCAGCCAGGAATGCAAGGGGGATACCAAAATCCACAAATGGGGCAGAGCGGTGGTGTTAGGCCTCATCCTGGCCCTGGCGCTCCTTACATGGGTCATTAG	1494	0.506	MAKKRKLRSSEPEPAKISDSQPAQQEQPQEQQIHEEVREDEQPRPVATLEEEHQGHETMAVDDDKHQEDVKLEGNEDVSAPPEVHPQEQDIEPPETAEAAADAAPSESVQADANGAEVGNENDDDVEVLDEEEPLEKLIEPFTKEQLYTLVKQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVIDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVAPPVSEYTQRKIFVSNVSAEIDPQKLLEFFGQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHSHHHQPHYQPRKEKNKYQSGGHGPGPGHLMAPSAPSVGFNPGVAAQGLNPALGQALTALLTTQGTGLGLGNLLGGLGGAPSNQAGPPAGYVNQPALGYGNQPGMQGGYQNPQMGQSGGVRPHPGPGAPYMGH	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g2113	497	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	176	253	IPR000504	GO:0003723
	Lele28g2113	497	MobiDBLite	consensus disorder prediction	1	126	-	-
	Lele28g2113	497	SMART	rrm1_1	177	249	IPR000504	GO:0003723
	Lele28g2113	497	SMART	rrm1_1	273	345	IPR000504	GO:0003723
	Lele28g2113	497	MobiDBLite	consensus disorder prediction	348	400	-	-
	Lele28g2113	497	MobiDBLite	consensus disorder prediction	31	78	-	-
	Lele28g2113	497	Gene3D	-	264	390	IPR012677	-
	Lele28g2113	497	Gene3D	-	84	259	IPR012677	-
	Lele28g2113	497	MobiDBLite	consensus disorder prediction	466	497	-	-
	Lele28g2113	497	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	272	350	IPR000504	GO:0003723
	Lele28g2113	497	SUPERFAMILY	RNA-binding domain, RBD	258	371	IPR035979	GO:0003676
	Lele28g2113	497	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	178	245	IPR000504	GO:0003723
	Lele28g2113	497	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	274	342	IPR000504	GO:0003723
	Lele28g2113	497	MobiDBLite	consensus disorder prediction	358	375	-	-
	Lele28g2113	497	CDD	RRM_RBM24_RBM38_like	176	251	-	-
	Lele28g2113	497	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	78	356	-	-
	Lele28g2113	497	MobiDBLite	consensus disorder prediction	14	30	-	-
	Lele28g2113	497	SUPERFAMILY	RNA-binding domain, RBD	165	254	IPR035979	GO:0003676
	Lele28g2113	497	CDD	RRM_RBM24_RBM38_like	272	347	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g2113	Lele-ChrLele28	23995543	23997036	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g2113	251	351	C2H2 Transcription Factor Family	AT2G19380	28.713	5.38e-09	56.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g2060	25	27920710	27923954	Lele28g2113	28	23995543	23997036	hybridization
	Lele26g2114	26	24171360	24174411	Lele28g2113	28	23995543	23997036	hybridization