Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2084 ATGAAGGTATTTGCTGTTTATGCTAGTGTGAGTCTATTTGCTTTGATTTGTGTCACAAGCGAAGCGAATCAGCAGGCAGAAAGTCTTCAAGAACTGATTGCGGCAAAGAGATCTTCAAATAATAGCGAAGTTGATCATCGGACAAATTCATGGTGGGACGAGGAAGAAGATGAAGTGTCCAAAGAGCAATATCATGTTTCATTAGAAGAACAAGAGGGATTAAGGAAGGCTGATAAGATTAGTTCATTGCCTGGACAGCCTCATGGGGTCAATTTTGATCAATATTCAGGTTATGTCACTGTTGATCCAAAAGCTGGTAGAGCGCTTTTCTATTATTTTGTCGAGTCTCCATATAACCCTTCAACGAAACCTCTAGTGTTGTGGCTCAATGGAGGACCAGGTTGTTCTTCACTGGGCTATGGGGCCATGGAGGAATTGGGACCCTTCAGAGTCAACTCTGACGGAAAAACACTGTTTTATAATAAATATGCTTGGAACACAGTGGCAAACGTGTTGTTCTTGGAATCACCAGCAGGAGTAGGGTTTTCGTACTCAAACACTTCATCGGATTATGATGAAGCAGGCGATAAGTTTACAGCGAAAGATTCATATGTGTTCCTCATCAATTGGCTTGAGAGATTCCCAAAATACAAATCCAGAGATTTCTTCATCACTGGAGAGAGCTATGCTGGCCACTACGTGCCTCAGCTTGCTCGAACCATTTTCGTCCACAACAAAAAAAAACCCACAACCGTTATCAATCTCAAAGGCATTGCAATAGGGAATCCATGGAGTTGGGTTGATGATGAAACAAGTAACAAGGGGGTGTATGATTACTTCTGGACGCATGCTATGATCTCTGATGAAACCCATGAAGCTATCGATAAGCACTGTGACAACTTTGCTTCAGAAAGTGTTTCAGAAGAAGATAATGGCCCACCAGGTTCTGTATATAATTATGATCCATGCTCTGAGACTTATGTGAAAGTCTACTTGAATAACCCAGAGGTTCAGCGAGCTCTGCATGCACTCCCCACAAATTGGACTCATTGCAGTGGGGACACAGATGGAAATGTGCCAGTCACCTCGTCAAGGTACTCCATCAACAAGCTCCAGCTTCCTGTCCAGGTTCCTTGGCGTCCATGGTATTCTGGAAATGAGGTAGGAGGATATGTGGAGCAATACAAAGGACTAACATTTGTGACAGTGAGAGGATCAGGGCATGAAGTTCCGAGTTGGCAACCTGCGAGGGCTCTCACTCTTTTCACTTCTTTCCTTAACCACTCTCTCCCTCCTTCCACCTTTGCATAA 1311 0.4363 MKVFAVYASVSLFALICVTSEANQQAESLQELIAAKRSSNNSEVDHRTNSWWDEEEDEVSKEQYHVSLEEQEGLRKADKISSLPGQPHGVNFDQYSGYVTVDPKAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAMEELGPFRVNSDGKTLFYNKYAWNTVANVLFLESPAGVGFSYSNTSSDYDEAGDKFTAKDSYVFLINWLERFPKYKSRDFFITGESYAGHYVPQLARTIFVHNKKKPTTVINLKGIAIGNPWSWVDDETSNKGVYDYFWTHAMISDETHEAIDKHCDNFASESVSEEDNGPPGSVYNYDPCSETYVKVYLNNPEVQRALHALPTNWTHCSGDTDGNVPVTSSRYSINKLQLPVQVPWRPWYSGNEVGGYVEQYKGLTFVTVRGSGHEVPSWQPARALTLFTSFLNHSLPPSTFA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2084 436 Gene3D - 328 352 - -
Lele28g2084 436 Gene3D alpha/beta hydrolase 75 327 IPR029058 -
Lele28g2084 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Lele28g2084 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 398 411 IPR001563 GO:0004185|GO:0006508
Lele28g2084 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 210 235 IPR001563 GO:0004185|GO:0006508
Lele28g2084 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Lele28g2084 436 SUPERFAMILY alpha/beta-Hydrolases 80 428 IPR029058 -
Lele28g2084 436 Pfam Serine carboxypeptidase 352 427 IPR001563 GO:0004185|GO:0006508
Lele28g2084 436 Pfam Serine carboxypeptidase 84 301 IPR001563 GO:0004185|GO:0006508
Lele28g2084 436 FunFam Carboxypeptidase 73 332 - -
Lele28g2084 436 ProSitePatterns Serine carboxypeptidases, histidine active site. 398 415 IPR033124 GO:0004185
Lele28g2084 436 Gene3D - 353 429 - -
Lele28g2084 436 ProSitePatterns Serine carboxypeptidases, serine active site. 224 231 IPR018202 GO:0004185
Lele28g2084 436 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 79 415 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2084 Lele-ChrLele28 23797170 23799739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g2084 352 427 Calmodulin-binding Proteins AT2G22960 32.468 6.48e-09 53.5