Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2080 ATGGTCCTTCTCCTGTTTCTGCTTTGGTGCTGTAGTCTTGTTGCTGCACTTGTTGTACTTTACCATGACAACGCTTTTCTTGCATCTCGTGCTTTGCACGTTGTAAATGCATTGAATAAATCTGCAATGTTCCCCATGCTGGAGTGGTTATTCAAGCATCAGAAACTAGTGAGAAATTCTATGGTGCTCGAACCAAGATTTTCAAGGGCTTCCATTGAGAACGAGATGGTGAAGTTTGTGACAGAAGTAGTTGGGAAATCCTATTATAGCTCTATCAAGAGTGGCTTCAATGACCGGAAAACTGATCTCCAAACAAGGGTGTCGTTTAAGTATGCTGCTTCAAAAAGGGGACTGGGAAGGAGGTCATCAGAGACAGACAGAGAAGGAGAGATGGATTTTGAACTGCGAAGAGCGAGAGAGAAACTAGAGAGAGAGCAGAAGGCTAGGAAGGAGAGGGCTCGGTTGAAATTGGAGAAGGAAAGGAAGGCTAAACAAGAGGCTAAGATTCAAAGGGATGCCATTGAAGCTGTTCAAAGATCTCGCCGTATTGATGCAGCCGAAGCCCAACTAAAGGCTGAGGAACAGATGCAAGAAAGCTTACTTGCTGGAAGAGGAATTGTGTTTTACCGTTTATTAGAAGCTGTACCTTGTCAAGGTAATGGTGATAAGATCAAACTGCCACCTTCATGCTTCACAGAATTGTCTGATCAGGGTGCCCTTGATAAAGGACCCATGTACTTTCAGTTGTCAATAGTTCATGAGGAGGGTTCTTCAGGAACGAAAGCTACTGAGGAAGAGAACCGAGGGAGCACCCATTCAGGAGTCTTAGAATTCACTGCTGATGAAGGTTCAGTAGGTCTTCCTCCTCATGTATGGAATAATTTGTTTGCTAACATCACCCCTAGGTCTCCATTAGTTGAGGTCCGCTATGTTGGACTTTCAAAGGGAACTTATGCAAAACTTCAACCTGAAAGGGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACAAGTCTTCGGCAACATGCAACTCTTTCTCAAGGTGATATTTTAACAGTCAACTATGGGGAACTTGCATACAAATTGAGGGTGCTTGAATTGAAACCTTCTTCAAGTGTATCTGTCTTAGAAACAGATATCGAAGTTGATATTGTCAATCCTGATACAAGCTCAGAAAAGAGAGATCAGAATGTTTTACTCCCGCTTGAATTTGGGGTGTCACAATATGGAATGGTGGATGAAGGAAATTTTGTATACTACAAATTCTCAATAGAAAATGGCAACTGGGACAAAATCTTTTCTGAGAATTCCAGTATTGAGGTAAAATTGGAAGCCGAGACAGGTAGCGGAGACACTGATCTTTTTATATCTAGACATCCTCTGATATTTCCTACTCGACACCAGCATGAGTGGTCATCCCATGATGTTGGTTCCAAGGCTTTGTTTCTTAGCTCTAAAGATAAGAACTTTGGGACTGGGACGTACAGCATTGGAGTATTTGGATTTAAGGGAACAACCAAATTCAAAATATCAGTGGCAATTCAGGAAATTTCCCACCAAAAAATTGGTCAACAAGCATCATCGTCTATGTCACATATGGAGACAGACACTGAACAGTGCCGGAATTGTAGGCATTACATACCTAGTAGGACTATTGCGTTGCATGAAGCTTACTGTCGCAGACATAATGTTATATGTCAACATGCTGGTTGTGGAGTTGTTCTTAGGATTGAGGAGTCCAAGAACCACATTCACTGTGACAGGTGCGGTAAAGCTTTTCAGCAGGGAGAATTGGAAAAGCACATGAAGGTTTTCCACGAACCTCTTCACTGTCCTTGTGCTGTAGTCCTTGAGAAAGAACAAATGGTTGAACACCAAGCTTCAGAGTGTCCCCTGCGTTTAATTGCATGTCGCTTTTGTGGTGACATGGTTCAAGCAGGAAGCTCTGCTGTTGACATCCGTGACAAGATTAGAGGGTTAACTGAACATGAGAGTGTTTGTGGCTCAAGGACAGCCCCATGTGATTCTTGCGGGCGTTCAGTGATGTTGAAGGACATGGACATTCACCAGATTGCGGTTCATCAACGAGGCTAA 2103 0.4284 MVLLLFLLWCCSLVAALVVLYHDNAFLASRALHVVNALNKSAMFPMLEWLFKHQKLVRNSMVLEPRFSRASIENEMVKFVTEVVGKSYYSSIKSGFNDRKTDLQTRVSFKYAASKRGLGRRSSETDREGEMDFELRRAREKLEREQKARKERARLKLEKERKAKQEAKIQRDAIEAVQRSRRIDAAEAQLKAEEQMQESLLAGRGIVFYRLLEAVPCQGNGDKIKLPPSCFTELSDQGALDKGPMYFQLSIVHEEGSSGTKATEEENRGSTHSGVLEFTADEGSVGLPPHVWNNLFANITPRSPLVEVRYVGLSKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVNPDTSSEKRDQNVLLPLEFGVSQYGMVDEGNFVYYKFSIENGNWDKIFSENSSIEVKLEAETGSGDTDLFISRHPLIFPTRHQHEWSSHDVGSKALFLSSKDKNFGTGTYSIGVFGFKGTTKFKISVAIQEISHQKIGQQASSSMSHMETDTEQCRNCRHYIPSRTIALHEAYCRRHNVICQHAGCGVVLRIEESKNHIHCDRCGKAFQQGELEKHMKVFHEPLHCPCAVVLEKEQMVEHQASECPLRLIACRFCGDMVQAGSSAVDIRDKIRGLTEHESVCGSRTAPCDSCGRSVMLKDMDIHQIAVHQRG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2080 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 655 IPR013083 -
Lele28g2080 700 Gene3D - 207 313 IPR042299 -
Lele28g2080 700 Pfam Ubiquitin fusion degradation protein UFD1 220 390 IPR004854 GO:0006511
Lele28g2080 700 Gene3D Glutaredoxin 12 117 - -
Lele28g2080 700 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 152 645 IPR004854 GO:0006511
Lele28g2080 700 Coils Coil 135 196 - -
Lele28g2080 700 Gene3D - 315 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2080 Lele-ChrLele28 23764675 23772172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele28g2080 UFD1 1.2e-47 CL0402