Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g2062 ATGTCCGCTTCACAGCGCAACAATTTTTGGACCTTCGACTCTGACCTCGACGGCATCGACCTTGACCCCCCCGATTTCGGCTCCTCCATCCCCCTCAAGAAGGTCACCAACGGCGACGTTTTCGCGGCCTCTCGCGCCGGCGACGTTGATCGCCTCCGGTACCTCCTCGAGTCCGGCGTCAACGTCAATGCTCGGGACCAGTGGGATTCTGTCGCTCTCTACTATGCTTGCCTTGCTGGTCACCTCGATGCTGCTCGCATGTTGCTCGAGAGTGGTGCAATCTGCTCTGAGCACACATTTGACGGTGACCGTTGCCACTATGCCGCCCTTAATTTGAAAGTCAGGAAGTTGTTGAAGGCATTTGAGGCAAGACCGCCGCCTCTGGGTCCCTTGCAGGCGGCGCTGAGAGATACTTTCTTGGGCTGTGCAGCTAATAGGGCCTACTTGGAGCTTGCTGATTCTCAATTTCAAATTTCCGGTATATCATCAGCTCAGGGATTCTATTGCAACCACTTTCCTCCGGATGTGGTTTTCTATGTATCAGGAAGACCTATTGAGGCTCACAGAGTCATATTAAGTGCGAGGTCACCATTTTTCAAGAAAAAGTTTGATTGTGATTGGAAAGAGCGCAGGGAAGTAAGATTCTCTAAGGAGAAGTTGTCCTTTCCTGCTCTCTATAGCCTCTTGCACTTCTTTTATTCTGACAGATTAGAGATTGCTGTAGATGACATGGAAGATCTTGTGAGAATCTGTAAAGTATGCAAATGCGAATCACTACAGACAATTCTGGAGAAAGAACTAATTCATCAAAAATATGCAGAGTATAAAGCGCTGAGAGATTTGGACAATTCTCAAAAGCGGTTCATTTTACAGGGTTTATCCCTTCCTGAAGAGGACAGGCTTCCTGCAGCCTTGCATCGAATCCTTTGTATTGCCCTTTCAAATTCAACTCAAGAAAATGTTCTAGATGGTGGAATTGATAAATTGGCCCTTCGGGTGGGTGCAATGCAGATTGCTAATTCTATGGATGATCTTGCAGATGTTTGTTTAAGAGTTGATAAAAAAGTTTTCCGCTGCCATCAAGTTATTTTAGCATCAAGGTCAGAATACTTCAAAGCAAGATTGTCACGTATACAGGACTTCCATGAAGGGAAAGATGAGTCATCTGTTGATTCCCTTCCTTGTCTTGAAGAACGTGATTTGAGCAAGGAATCATTTGAGAAAATGATTGAGTATATGTACACTGATGGTCTGAAGGACATTGATCCGGATCAGGCAGAGGAAATGTTTGATGCTGCTTCTAGATATTTATTGTTTCCTCTAAAGCGTGCTGTGGCTGATGCTCTGCTGCCGCACTTGGAAATGGTTTCACCTGCAGAACTTTGCCATTGGTTGATACTGGCGGACATGTATGGTGTCTTGAAGATACGGGAATATTGTCTAGATACCATAGCTTGTAATTTTGAAACATTTGCTGATACTAAAGAATTCCGAGCAATGCTATTGACGCTGCCGCCACCATCCGGAGATTCCTCTCTACGTACCACTGCCCCAAGTGTTCCCGGAGCTGCTCTGAACACCGATCAAGGGAATCTTCTTGACGATTTACGAGAGAAATGGCTTGAAATTGAAGCTGCCGAGCTTGATGAGAGAGATGAGAGCGCGTTGCAGTTTGACAAGCGTCTAGAGATGCTTATTCTTGTTGCAGAGCAAGAAAAAATAGGCAATACTGAATAA 1737 0.456 MSASQRNNFWTFDSDLDGIDLDPPDFGSSIPLKKVTNGDVFAASRAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQAALRDTFLGCAANRAYLELADSQFQISGISSAQGFYCNHFPPDVVFYVSGRPIEAHRVILSARSPFFKKKFDCDWKERREVRFSKEKLSFPALYSLLHFFYSDRLEIAVDDMEDLVRICKVCKCESLQTILEKELIHQKYAEYKALRDLDNSQKRFILQGLSLPEEDRLPAALHRILCIALSNSTQENVLDGGIDKLALRVGAMQIANSMDDLADVCLRVDKKVFRCHQVILASRSEYFKARLSRIQDFHEGKDESSVDSLPCLEERDLSKESFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADALLPHLEMVSPAELCHWLILADMYGVLKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTAPSVPGAALNTDQGNLLDDLREKWLEIEAAELDERDESALQFDKRLEMLILVAEQEKIGNTE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g2062 578 FunFam BTB/POZ domain-containing protein 34 157 - -
Lele28g2062 578 ProSiteProfiles BTB domain profile. 346 422 IPR000210 GO:0005515
Lele28g2062 578 SUPERFAMILY POZ domain 341 452 IPR011333 -
Lele28g2062 578 Pfam BTB/POZ domain 344 449 IPR000210 GO:0005515
Lele28g2062 578 Pfam BTB/POZ domain 170 270 IPR000210 GO:0005515
Lele28g2062 578 Gene3D - 18 160 IPR036770 -
Lele28g2062 578 FunFam BTB/POZ domain-containing protein 168 290 - -
Lele28g2062 578 SUPERFAMILY Ankyrin repeat 42 119 IPR036770 -
Lele28g2062 578 CDD BACK 462 500 - -
Lele28g2062 578 Pfam Ankyrin repeats (many copies) 41 89 IPR002110 GO:0005515
Lele28g2062 578 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 12 569 IPR044515 -
Lele28g2062 578 ProSiteProfiles Ankyrin repeat profile. 43 67 IPR002110 GO:0005515
Lele28g2062 578 Gene3D Potassium Channel Kv1.1; Chain A 337 495 IPR011333 -
Lele28g2062 578 Gene3D Potassium Channel Kv1.1; Chain A 161 289 IPR011333 -
Lele28g2062 578 CDD BTB_POZ_ZBTB_KLHL-like 345 436 - -
Lele28g2062 578 SUPERFAMILY POZ domain 160 269 IPR011333 -
Lele28g2062 578 ProSiteProfiles BTB domain profile. 174 241 IPR000210 GO:0005515
Lele28g2062 578 SMART BTB_4 346 453 IPR000210 GO:0005515
Lele28g2062 578 SMART BTB_4 174 271 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g2062 Lele-ChrLele28 23642973 23646519 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele28g2062 BTB 3.7e-15 CL0033